loading... /abysis/webdata/jsmol/j2s/core/package.js
loading... /abysis/webdata/jsmol/j2s/core/core.z.js -- required by ClazzNode
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(C) 2012 Jmol Development
Jmol Version: 14.0.13 2014-04-01 23:19
java.vendor: Java2Script (HTML5)
java.version: JSmol 14.1.11 Mar 1, 2014
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loading... /abysis/webdata/jsmol/j2s/core/corescript.z.js
script 1 started
FileManager.getAtomSetCollectionFromFile(/abysis/webdata/jsmol/models/1baf_L_1baf_H.pdb)
FileManager opening 1 http://abysis.org/abysis/webdata/jsmol/models/1baf_L_1baf_H.pdb
The Resolver thinks Pdb
loading... /abysis/webdata/jsmol/j2s/core/corebio.z.js
loading... /abysis/webdata/jsmol/j2s/J/render/MeshRenderer.js -- required by J.renderbio.BioShapeRenderer
loading... /abysis/webdata/jsmol/j2s/J/shape/Mesh.js
abYsis extract from PDB 1baf
2.9 A RESOLUTION STRUCTURE OF AN ANTI-DINITROPHENYL-SPIN-LABEL MONOCLONAL ANTIBODY FAB FRAGMENT WITH BOUND HAPTEN.
Time for openFile(/abysis/webdata/jsmol/models/1baf_L_1baf_H.pdb): 1005 ms
reading 4054 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
4054 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Jmol 14.0.13 2014-04-01 23:19 DSSP analysis for model 1.1 - null
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer for our purposes. At this point in time, we make no guarantee
that this code gives precisely the same analysis as the code available via license
from CMBI at http://swift.cmbi.ru.nl/gv/dssp
All bioshapes have been deleted and must be regenerated.
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
abYsis extract from PDB 1baf
2.9 A RESOLUTION STRUCTURE OF AN ANTI-DINITROPHENYL-SPIN-LABEL MONOCLONAL ANTIBODY FAB FRAGMENT WITH BOUND HAPTEN.
4054 atoms selected
2031 atoms selected
1010 atoms selected
2023 atoms selected
904 atoms selected
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loading... /abysis/webdata/jsmol/j2s/JV/JmolStateCreator.js -- required by JV.StateCreator
Script completed
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