abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
Leader	GP	1 - 2	2
HFR1	QVQLQESGGGLVQAGGSLRLSCAASRSIFS	3 - 32	30
CDR-H1	IDTAN	33 - 37	5
HFR2	WYRQPPGMQRELVA	38 - 51	14
CDR-H2	TITRDGNANYADSVKG	52 - 67	16
HFR3	RFTISRDRARNTVYLQMNSLKPEDTGVYYCNA	68 - 99	32
CDR-H3	AIRTTVRTSAQEY	100 - 112	13
HFR4	WGQGTQVTVSS	113 - 123	11
			123

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQAGGSLRLSCAAS-----	3 - 27	25
	AbM	QVQLQESGGGLVQAGGSLRLSCAAS-----	3 - 27	25
	Kabat	QVQLQESGGGLVQAGGSLRLSCAASRSIFS	3 - 32	30
	Contact	QVQLQESGGGLVQAGGSLRLSCAASRSIF-	3 - 31	29
	IMGT	QVQLQESGGGLVQAGGSLRLSCAAS-----	3 - 27	25
CDR-H1	Chothia	RSIFSID---	28 - 34	7
	AbM	RSIFSIDTAN	28 - 37	10
	Kabat	-----IDTAN	33 - 37	5
	Contact	----SIDTAN	32 - 37	6
	IMGT	RSIFSIDT--	28 - 35	8
HFR2	Chothia	TANWYRQPPGMQRELVATI	35 - 53	19
	AbM	---WYRQPPGMQRELVA--	38 - 51	14
	Kabat	---WYRQPPGMQRELVA--	38 - 51	14
	Contact	---WYRQPPGMQRE-----	38 - 48	11
	IMGT	-ANWYRQPPGMQRELVAT-	36 - 52	17
CDR-H2	Chothia	-----TRDGN---------	54 - 58	5
	AbM	---TITRDGNAN-------	52 - 60	9
	Kabat	---TITRDGNANYADSVKG	52 - 67	16
	Contact	LVATITRDGNAN-------	49 - 60	12
	IMGT	----ITRDGNA--------	53 - 59	7
HFR3	Chothia	ANYADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYCNA	59 - 99	41
	AbM	--YADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYCNA	61 - 99	39
	Kabat	---------RFTISRDRARNTVYLQMNSLKPEDTGVYYCNA	68 - 99	32
	Contact	--YADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYC--	61 - 97	37
	IMGT	-NYADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYC--	60 - 97	38
CDR-H3	Chothia	--AIRTTVRTSAQEY	100 - 112	13
	AbM	--AIRTTVRTSAQEY	100 - 112	13
	Kabat	--AIRTTVRTSAQEY	100 - 112	13
	Contact	NAAIRTTVRTSAQE-	98 - 111	14
	IMGT	NAAIRTTVRTSAQEY	98 - 112	15
HFR4	Chothia	-WGQGTQVTVSS	113 - 123	11
	AbM	-WGQGTQVTVSS	113 - 123	11
	Kabat	-WGQGTQVTVSS	113 - 123	11
	Contact	YWGQGTQVTVSS	112 - 123	12
	IMGT	-WGQGTQVTVSS	113 - 123	11

Accession & Annotations

Accession	5m94_B
Source	PDB 5m94 Submitted 31-OCT-2016 Updated 21-DEC-2016
Name	CRYSTAL STRUCTURE OF STAPHYLOCOCCUS CAPITIS DIVALENT METAL ION TRANSPORTER (DMT) IN COMPLEX WITH NANOBODY
Organism	Lama glama
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	PDB: 5m94_D
References	EHRNSTORFER A., GEERTSMA R., PARDON E., STEYAERT J., DUTZLER R. 'CRYSTAL STRUCTURE OF A SLC11 (NRAMP) TRANSPORTER REVEALS THE BASIS FOR TRANSITION-METAL ION TRANSPORT.' NAT. STRUCT. MOL. BIOL. V. 21 990 2014 ESSN 1545-9985

Tools

Sequences

Amino Acid Sequence:

GPQVQLQESGGGLVQAGGSLRLSCAASRSIFSIDTANWYRQPPGMQRELVATITRDGNAN
YADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYCNAAIRTTVRTSAQEYWGQGTQVT
VSS