abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
Leader	M	1 - 1	1
HFR1	QVQLVESGGGLVHPGGSLRLSCAASGRTGS	2 - 31	30
CDR-H1	RHAVA	32 - 36	5
HFR2	WFRQAPGKERDFVA	37 - 50	14
CDR-H2	SINAVGLVRNYADSVLG	51 - 67	17
HFR3	RFSISRDFAKNEVYLQMNSLEPEDTAVYYCAA	68 - 99	32
CDR-H3	RYYSGTYSSTYDRDDYDY	100 - 117	18
HFR4	WGQGTQVTVSS	118 - 128	11
Tail	GGGLPETGGLEHHHHHH	128 - 145	17
			145

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLVESGGGLVHPGGSLRLSCAAS-----	2 - 26	25
	AbM	QVQLVESGGGLVHPGGSLRLSCAAS-----	2 - 26	25
	Kabat	QVQLVESGGGLVHPGGSLRLSCAASGRTGS	2 - 31	30
	Contact	QVQLVESGGGLVHPGGSLRLSCAASGRTG-	2 - 30	29
	IMGT	QVQLVESGGGLVHPGGSLRLSCAAS-----	2 - 26	25
CDR-H1	Chothia	GRTGSRH---	27 - 33	7
	AbM	GRTGSRHAVA	27 - 36	10
	Kabat	-----RHAVA	32 - 36	5
	Contact	----SRHAVA	31 - 36	6
	IMGT	GRTGSRHA--	27 - 34	8
HFR2	Chothia	AVAWFRQAPGKERDFVASI	34 - 52	19
	AbM	---WFRQAPGKERDFVA--	37 - 50	14
	Kabat	---WFRQAPGKERDFVA--	37 - 50	14
	Contact	---WFRQAPGKERD-----	37 - 47	11
	IMGT	-VAWFRQAPGKERDFVAS-	35 - 51	17
CDR-H2	Chothia	-----NAVGLV---------	53 - 58	6
	AbM	---SINAVGLVRN-------	51 - 60	10
	Kabat	---SINAVGLVRNYADSVLG	51 - 67	17
	Contact	FVASINAVGLVRN-------	48 - 60	13
	IMGT	----INAVGLVR--------	52 - 59	8
HFR3	Chothia	RNYADSVLGRFSISRDFAKNEVYLQMNSLEPEDTAVYYCAA	59 - 99	41
	AbM	--YADSVLGRFSISRDFAKNEVYLQMNSLEPEDTAVYYCAA	61 - 99	39
	Kabat	---------RFSISRDFAKNEVYLQMNSLEPEDTAVYYCAA	68 - 99	32
	Contact	--YADSVLGRFSISRDFAKNEVYLQMNSLEPEDTAVYYC--	61 - 97	37
	IMGT	-NYADSVLGRFSISRDFAKNEVYLQMNSLEPEDTAVYYC--	60 - 97	38
CDR-H3	Chothia	--RYYSGTYSSTYDRDDYDY	100 - 117	18
	AbM	--RYYSGTYSSTYDRDDYDY	100 - 117	18
	Kabat	--RYYSGTYSSTYDRDDYDY	100 - 117	18
	Contact	AARYYSGTYSSTYDRDDYD-	98 - 116	19
	IMGT	AARYYSGTYSSTYDRDDYDY	98 - 117	20
HFR4	Chothia	-WGQGTQVTVSS	118 - 128	11
	AbM	-WGQGTQVTVSS	118 - 128	11
	Kabat	-WGQGTQVTVSS	118 - 128	11
	Contact	YWGQGTQVTVSS	117 - 128	12
	IMGT	-WGQGTQVTVSS	118 - 128	11

Accession & Annotations

Accession	5td8_E
Source	PDB 5td8 Submitted 17-SEP-2016 Updated 22-NOV-2017
Name	CRYSTAL STRUCTURE OF AN EXTENDED DWARF NDC80 COMPLEX
Organism	Vicugna pacos
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	VALVERDE R., INGRAM J., HARRISON C. 'CONSERVED TETRAMER JUNCTION IN THE KINETOCHORE NDC80 COMPLEX.' CELL REP V. 17 1915 2016 ESSN 2211-1247

Tools

Sequences

Amino Acid Sequence:

MQVQLVESGGGLVHPGGSLRLSCAASGRTGSRHAVAWFRQAPGKERDFVASINAVGLVRN
YADSVLGRFSISRDFAKNEVYLQMNSLEPEDTAVYYCAARYYSGTYSSTYDRDDYDYWGQ
GTQVTVSSGGGLPETGGLEHHHHHH