abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	LQQSGGGLVQAGNSLTLSCAASGGTFN	1 - 27	27
CDR-H1	IWTMG	28 - 32	5
HFR2	WFRQVPGKEREFVA	33 - 46	14
CDR-H2	AITRSARSWNGAMTDYSDSVKG	47 - 68	22
HFR3	RFTISGDNAKNTVYLQMNSLKPEDTAVYYCAA	69 - 100	32
CDR-H3	DKTTYWNIPRDEYDY	101 - 115	15
HFR4	WGQGTQVT	116 - 123	8
			123

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	LQQSGGGLVQAGNSLTLSCAAS-----	1 - 22	22
	AbM	LQQSGGGLVQAGNSLTLSCAAS-----	1 - 22	22
	Kabat	LQQSGGGLVQAGNSLTLSCAASGGTFN	1 - 27	27
	Contact	LQQSGGGLVQAGNSLTLSCAASGGTF-	1 - 26	26
	IMGT	LQQSGGGLVQAGNSLTLSCAAS-----	1 - 22	22
CDR-H1	Chothia	GGTFNIW---	23 - 29	7
	AbM	GGTFNIWTMG	23 - 32	10
	Kabat	-----IWTMG	28 - 32	5
	Contact	----NIWTMG	27 - 32	6
	IMGT	GGTFNIWT--	23 - 30	8
HFR2	Chothia	TMGWFRQVPGKEREFVAAI	30 - 48	19
	AbM	---WFRQVPGKEREFVA--	33 - 46	14
	Kabat	---WFRQVPGKEREFVA--	33 - 46	14
	Contact	---WFRQVPGKERE-----	33 - 43	11
	IMGT	-MGWFRQVPGKEREFVAA-	31 - 47	17
CDR-H2	Chothia	-----TRSARSWNGAM---------	49 - 59	11
	AbM	---AITRSARSWNGAMTD-------	47 - 61	15
	Kabat	---AITRSARSWNGAMTDYSDSVKG	47 - 68	22
	Contact	FVAAITRSARSWNGAMTD-------	44 - 61	18
	IMGT	----ITRSARSWNGAMT--------	48 - 60	13
HFR3	Chothia	TDYSDSVKGRFTISGDNAKNTVYLQMNSLKPEDTAVYYCAA	60 - 100	41
	AbM	--YSDSVKGRFTISGDNAKNTVYLQMNSLKPEDTAVYYCAA	62 - 100	39
	Kabat	---------RFTISGDNAKNTVYLQMNSLKPEDTAVYYCAA	69 - 100	32
	Contact	--YSDSVKGRFTISGDNAKNTVYLQMNSLKPEDTAVYYC--	62 - 98	37
	IMGT	-DYSDSVKGRFTISGDNAKNTVYLQMNSLKPEDTAVYYC--	61 - 98	38
CDR-H3	Chothia	--DKTTYWNIPRDEYDY	101 - 115	15
	AbM	--DKTTYWNIPRDEYDY	101 - 115	15
	Kabat	--DKTTYWNIPRDEYDY	101 - 115	15
	Contact	AADKTTYWNIPRDEYD-	99 - 114	16
	IMGT	AADKTTYWNIPRDEYDY	99 - 115	17
HFR4	Chothia	-WGQGTQVT	116 - 123	8
	AbM	-WGQGTQVT	116 - 123	8
	Kabat	-WGQGTQVT	116 - 123	8
	Contact	YWGQGTQVT	115 - 123	9
	IMGT	-WGQGTQVT	116 - 123	8

Accession & Annotations

Accession	CAH60946.1
Source	abYsis-EMBL-IG AJ849431 Submitted 12-OCT-2004 Updated 13-OCT-2004
Name	immunoglobulin heavy chain variable region
Clone	LT154
Organism	Lama glama
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	Harmsen M.M. Submitted (12-OCT-2004) to the INSDC. Harmsen M.M., Infection Biology, Animal Sciences Group (ID-Lelystad BV), Edelhertweg 15, Lelystad, 8219 PH, NETHERLANDS. Harmsen M.M. 'Selection of llama single-domain antibody fragments binding to Escherichi a coli heat-labile enterotoxin' Unpublished.

Tools

Sequences

Amino Acid Sequence:

LQQSGGGLVQAGNSLTLSCAASGGTFNIWTMGWFRQVPGKEREFVAAITRSARSWNGAMT
DYSDSVKGRFTISGDNAKNTVYLQMNSLKPEDTAVYYCAADKTTYWNIPRDEYDYWGQGT
QVT

DNA Sequence:

ctgcagcagtcagggggaggattggtgcaggctgggaactctctgacactctcctgtgca
gcctctggcggcaccttcaatatctggaccatgggctggttccgccaggttccagggaag
gagcgtgagtttgtagcagctattacccggagtgctcgtagttggaatggtgccatgaca
gactattcagactccgtgaagggccgattcaccatctccggagacaacgccaagaacacg
gtgtatctgcaaatgaacagcctgaaacctgaggacacggccgtttattactgtgcagca
gacaaaactacgtactggaatattccgcgggatgagtatgactactggggccaggggacc
caggtcacc

Data Source:

Alignment settings:

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