abYsis

Numbering & Regions

Comparison Organism:

Calculating, please wait ...

Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
Leader	GST	1 - 3	3
HFR1	QVQLAESGGGLVQPGGSLRLSCSASGGVFI	4 - 33	30
CDR-H1	IYNMG	34 - 38	5
HFR2	WYRQAPGKQRELVA	39 - 52	14
CDR-H2	SIDSYSGSITNYADSVKG	53 - 70	18
HFR3	RFTISRDNVEKRVYLEMNNLKPEDTAVYYCNA	71 - 102	32
CDR-H3	NLRTNNY	103 - 109	7
HFR4	WGQGTQVTVSS	110 - 120	11
Tail	EPKTPKPQPARQGAPVPYPDPLEP	120 - 144	24
			144

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLAESGGGLVQPGGSLRLSCSAS-----	4 - 28	25
	AbM	QVQLAESGGGLVQPGGSLRLSCSAS-----	4 - 28	25
	Kabat	QVQLAESGGGLVQPGGSLRLSCSASGGVFI	4 - 33	30
	Contact	QVQLAESGGGLVQPGGSLRLSCSASGGVF-	4 - 32	29
	IMGT	QVQLAESGGGLVQPGGSLRLSCSAS-----	4 - 28	25
CDR-H1	Chothia	GGVFIIY---	29 - 35	7
	AbM	GGVFIIYNMG	29 - 38	10
	Kabat	-----IYNMG	34 - 38	5
	Contact	----IIYNMG	33 - 38	6
	IMGT	GGVFIIYN--	29 - 36	8
HFR2	Chothia	NMGWYRQAPGKQRELVASI	36 - 54	19
	AbM	---WYRQAPGKQRELVA--	39 - 52	14
	Kabat	---WYRQAPGKQRELVA--	39 - 52	14
	Contact	---WYRQAPGKQRE-----	39 - 49	11
	IMGT	-MGWYRQAPGKQRELVAS-	37 - 53	17
CDR-H2	Chothia	-----DSYSGSI---------	55 - 61	7
	AbM	---SIDSYSGSITN-------	53 - 63	11
	Kabat	---SIDSYSGSITNYADSVKG	53 - 70	18
	Contact	LVASIDSYSGSITN-------	50 - 63	14
	IMGT	----IDSYSGSIT--------	54 - 62	9
HFR3	Chothia	TNYADSVKGRFTISRDNVEKRVYLEMNNLKPEDTAVYYCNA	62 - 102	41
	AbM	--YADSVKGRFTISRDNVEKRVYLEMNNLKPEDTAVYYCNA	64 - 102	39
	Kabat	---------RFTISRDNVEKRVYLEMNNLKPEDTAVYYCNA	71 - 102	32
	Contact	--YADSVKGRFTISRDNVEKRVYLEMNNLKPEDTAVYYC--	64 - 100	37
	IMGT	-NYADSVKGRFTISRDNVEKRVYLEMNNLKPEDTAVYYC--	63 - 100	38
CDR-H3	Chothia	--NLRTNNY	103 - 109	7
	AbM	--NLRTNNY	103 - 109	7
	Kabat	--NLRTNNY	103 - 109	7
	Contact	NANLRTNN-	101 - 108	8
	IMGT	NANLRTNNY	101 - 109	9
HFR4	Chothia	-WGQGTQVTVSS	110 - 120	11
	AbM	-WGQGTQVTVSS	110 - 120	11
	Kabat	-WGQGTQVTVSS	110 - 120	11
	Contact	YWGQGTQVTVSS	109 - 120	12
	IMGT	-WGQGTQVTVSS	110 - 120	11

Accession & Annotations

Accession	5vxl_B
Source	PDB 5vxl Submitted 23-MAY-2017 Updated 30-AUG-2017
Name	2.80 A RESOLUTION STRUCTURE OF IPAD FROM SHIGELLA FLEXNERI IN COMPLEX WITH SINGLE-DOMAIN ANTIBODY JPS-G3
Organism	Vicugna pacos
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	BARTA L., LOVELL S., BATTAILE P., PICKING D., PICKING L. '2.80 A RESOLUTION STRUCTURE OF IPAD FROM SHIGELLA FLEXNERI IN COMPLEX WITH SINGLE-DOMAIN ANTIBODY JPS-G3' TO BE PUBLISHED

Tools

Sequences

Amino Acid Sequence:

GSTQVQLAESGGGLVQPGGSLRLSCSASGGVFIIYNMGWYRQAPGKQRELVASIDSYSGS
ITNYADSVKGRFTISRDNVEKRVYLEMNNLKPEDTAVYYCNANLRTNNYWGQGTQVTVSS
EPKTPKPQPARQGAPVPYPDPLEP