abYsis

Numbering & Regions

Comparison Organism:

Calculating, please wait ...

Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLVESGGGLVQAGGSLKLSCTTSGRPFS	1 - 30	30
CDR-H1	TFDLA	31 - 35	5
HFR2	WFRQAPGKEREFVS	36 - 49	14
CDR-H2	GLRRGGSTFYADSVSG	50 - 65	16
HFR3	RFTISGGSTKNTLYLQMNSLKPEDTAIYYCAR	66 - 97	32
CDR-H3	SITGYGLVDSASHYTI	98 - 113	16
HFR4	WGQGTQVTVSS	114 - 124	11
Tail	HHHHHHEPEA	124 - 134	10
			134

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLVESGGGLVQAGGSLKLSCTTS-----	1 - 25	25
	AbM	QVQLVESGGGLVQAGGSLKLSCTTS-----	1 - 25	25
	Kabat	QVQLVESGGGLVQAGGSLKLSCTTSGRPFS	1 - 30	30
	Contact	QVQLVESGGGLVQAGGSLKLSCTTSGRPF-	1 - 29	29
	IMGT	QVQLVESGGGLVQAGGSLKLSCTTS-----	1 - 25	25
CDR-H1	Chothia	GRPFSTF---	26 - 32	7
	AbM	GRPFSTFDLA	26 - 35	10
	Kabat	-----TFDLA	31 - 35	5
	Contact	----STFDLA	30 - 35	6
	IMGT	GRPFSTFD--	26 - 33	8
HFR2	Chothia	DLAWFRQAPGKEREFVSGL	33 - 51	19
	AbM	---WFRQAPGKEREFVS--	36 - 49	14
	Kabat	---WFRQAPGKEREFVS--	36 - 49	14
	Contact	---WFRQAPGKERE-----	36 - 46	11
	IMGT	-LAWFRQAPGKEREFVSG-	34 - 50	17
CDR-H2	Chothia	-----RRGGS---------	52 - 56	5
	AbM	---GLRRGGSTF-------	50 - 58	9
	Kabat	---GLRRGGSTFYADSVSG	50 - 65	16
	Contact	FVSGLRRGGSTF-------	47 - 58	12
	IMGT	----LRRGGST--------	51 - 57	7
HFR3	Chothia	TFYADSVSGRFTISGGSTKNTLYLQMNSLKPEDTAIYYCAR	57 - 97	41
	AbM	--YADSVSGRFTISGGSTKNTLYLQMNSLKPEDTAIYYCAR	59 - 97	39
	Kabat	---------RFTISGGSTKNTLYLQMNSLKPEDTAIYYCAR	66 - 97	32
	Contact	--YADSVSGRFTISGGSTKNTLYLQMNSLKPEDTAIYYC--	59 - 95	37
	IMGT	-FYADSVSGRFTISGGSTKNTLYLQMNSLKPEDTAIYYC--	58 - 95	38
CDR-H3	Chothia	--SITGYGLVDSASHYTI	98 - 113	16
	AbM	--SITGYGLVDSASHYTI	98 - 113	16
	Kabat	--SITGYGLVDSASHYTI	98 - 113	16
	Contact	ARSITGYGLVDSASHYT-	96 - 112	17
	IMGT	ARSITGYGLVDSASHYTI	96 - 113	18
HFR4	Chothia	-WGQGTQVTVSS	114 - 124	11
	AbM	-WGQGTQVTVSS	114 - 124	11
	Kabat	-WGQGTQVTVSS	114 - 124	11
	Contact	IWGQGTQVTVSS	113 - 124	12
	IMGT	-WGQGTQVTVSS	114 - 124	11

Accession & Annotations

Accession	6eqi_B
Source	PDB 6eqi Submitted 13-OCT-2017 Updated 31-JAN-2018
Name	STRUCTURE OF PINK1 BOUND TO UBIQUITIN
Organism	Lama glama
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	SCHUBERT F., GLADKOVA C., PARDON E., WAGSTAFF L., FREUND V., STEYAERT J., MASLEN L., KOMANDER D. 'STRUCTURE OF PINK1 IN COMPLEX WITH ITS SUBSTRATE UBIQUITIN.' NATURE V. 552 51 2017 ESSN 1476-4687

Tools

Sequences

Amino Acid Sequence:

QVQLVESGGGLVQAGGSLKLSCTTSGRPFSTFDLAWFRQAPGKEREFVSGLRRGGSTFYA
DSVSGRFTISGGSTKNTLYLQMNSLKPEDTAIYYCARSITGYGLVDSASHYTIWGQGTQV
TVSSHHHHHHEPEA