abYsis

Numbering & Regions

Comparison Organism:

Calculating, please wait ...

Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
LFR1	DILLTQSPASLVVSLGQRATISC	1 - 23	23
CDR-L1	RASQSVSTSTYSHIH	24 - 38	15
LFR2	WYQQKPGQTFKVLIK	39 - 53	15
CDR-L2	YASNLAS	54 - 60	7
LFR3	GVPVRFSGSGSGTDSTLNIHPVAEEDSATYYC	61 - 92	32
CDR-L3	QHSREIPWT	93 - 101	9
LFR4	FGGGTKLEIK	102 - 111	10
			111

Region	Definition	Sequence Fragment	Residues	Length
LFR1	Chothia	DILLTQSPASLVVSLGQRATISC------	1 - 23	23
	AbM	DILLTQSPASLVVSLGQRATISC------	1 - 23	23
	Kabat	DILLTQSPASLVVSLGQRATISC------	1 - 23	23
	Contact	DILLTQSPASLVVSLGQRATISCRASQSV	1 - 29	29
	IMGT	DILLTQSPASLVVSLGQRATISCRAS---	1 - 26	26
CDR-L1	Chothia	RASQSVSTSTYSHIH--	24 - 38	15
	AbM	RASQSVSTSTYSHIH--	24 - 38	15
	Kabat	RASQSVSTSTYSHIH--	24 - 38	15
	Contact	------STSTYSHIHWY	30 - 40	11
	IMGT	---QSVSTSTYSH----	27 - 36	10
LFR2	Chothia	--WYQQKPGQTFKVLIK	39 - 53	15
	AbM	--WYQQKPGQTFKVLIK	39 - 53	15
	Kabat	--WYQQKPGQTFKVLIK	39 - 53	15
	Contact	----QQKPGQTFK----	41 - 49	9
	IMGT	IHWYQQKPGQTFKVLIK	37 - 53	17
CDR-L2	Chothia	----YASNLAS	54 - 60	7
	AbM	----YASNLAS	54 - 60	7
	Kabat	----YASNLAS	54 - 60	7
	Contact	VLIKYASNLA-	50 - 59	10
	IMGT	----YA-----	54 - 55	2
LFR3	Chothia	-----GVPVRFSGSGSGTDSTLNIHPVAEEDSATYYC	61 - 92	32
	AbM	-----GVPVRFSGSGSGTDSTLNIHPVAEEDSATYYC	61 - 92	32
	Kabat	-----GVPVRFSGSGSGTDSTLNIHPVAEEDSATYYC	61 - 92	32
	Contact	----SGVPVRFSGSGSGTDSTLNIHPVAEEDSATYYC	60 - 92	33
	IMGT	SNLASGVPVRFSGSGSGTDSTLNIHPVAEEDSATYYC	56 - 92	37
CDR-L3	Chothia	QHSREIPWT	93 - 101	9
	AbM	QHSREIPWT	93 - 101	9
	Kabat	QHSREIPWT	93 - 101	9
	Contact	QHSREIPW-	93 - 100	8
	IMGT	QHSREIPWT	93 - 101	9
LFR4	Chothia	-FGGGTKLEIK	102 - 111	10
	AbM	-FGGGTKLEIK	102 - 111	10
	Kabat	-FGGGTKLEIK	102 - 111	10
	Contact	TFGGGTKLEIK	101 - 111	11
	IMGT	-FGGGTKLEIK	102 - 111	10

Accession & Annotations

Accession	AKR15656.1
Source	abYsis-EMBL-IG KP702267 Submitted 31-JUL-2015 Updated 23-JUN-2016
Name	anti-hydrazine hydrate derivative of iso-tenuazonic acid antibody light chain variable region
Organism	Synthetic construct
Chain Type	Light
Pairing	None
Identical Protein Sequences	None
References	Xu C. Submitted (26-JAN-2015) to the INSDC. Food Science, Key Laboratory of Food Quality and Safety, South China Agricultural University, Guangzhou, Guangdong 510642, China Xu C. 'Construction and characterization of a single-chain variable fragment against hydrazine hydrate derivative of the iso-tenuazonic acid' Unpublished.

Tools

Sequences

Amino Acid Sequence:

DILLTQSPASLVVSLGQRATISCRASQSVSTSTYSHIHWYQQKPGQTFKVLIKYASNLAS
GVPVRFSGSGSGTDSTLNIHPVAEEDSATYYCQHSREIPWTFGGGTKLEIK

DNA Sequence:

gacattttgctgactcaatctcctgcttccttagtcgtttctctggggcagagggccacc
atctcatgcagggccagtcaaagtgtcagtacatctacctatagtcatatacactggtat
caacagaaaccaggacagacattcaaagtcctcatcaagtatgcatccaacctagcttct
ggggtccctgtcaggttcagtggcagtgggtctgggacagactccaccctcaacatccat
cctgtggcggaggaggattctgcaacatattactgtcagcacagtcgggagattccgtgg
acgttcggtggagggaccaagctggaaataaaa

Data Source:

Alignment settings:

Search settings: