abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVKLEQSGPGLVKPSQSLSLTCSVTGYSIT	1 - 30	30
CDR-H1	SGYYWN	31 - 36	6
HFR2	WIRQFPGNKVEWLG	37 - 50	14
CDR-H2	YITYDGRSAYNPSLKN	51 - 66	16
HFR3	RISITRDTSKNQFFLNLNSVTTEDTATYYCVD	67 - 98	32
CDR-H3	WDN	99 - 101	3
HFR4	WGHGTTLTVSS	102 - 112	11
Tail	AKTTPP	112 - 118	6
			118

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVKLEQSGPGLVKPSQSLSLTCSVT-----	1 - 25	25
	AbM	QVKLEQSGPGLVKPSQSLSLTCSVT-----	1 - 25	25
	Kabat	QVKLEQSGPGLVKPSQSLSLTCSVTGYSIT	1 - 30	30
	Contact	QVKLEQSGPGLVKPSQSLSLTCSVTGYSI-	1 - 29	29
	IMGT	QVKLEQSGPGLVKPSQSLSLTCSVT-----	1 - 25	25
CDR-H1	Chothia	GYSITSGY---	26 - 33	8
	AbM	GYSITSGYYWN	26 - 36	11
	Kabat	-----SGYYWN	31 - 36	6
	Contact	----TSGYYWN	30 - 36	7
	IMGT	GYSITSGYY--	26 - 34	9
HFR2	Chothia	YWNWIRQFPGNKVEWLGYI	34 - 52	19
	AbM	---WIRQFPGNKVEWLG--	37 - 50	14
	Kabat	---WIRQFPGNKVEWLG--	37 - 50	14
	Contact	---WIRQFPGNKVE-----	37 - 47	11
	IMGT	-WNWIRQFPGNKVEWLGY-	35 - 51	17
CDR-H2	Chothia	-----TYDGR---------	53 - 57	5
	AbM	---YITYDGRSA-------	51 - 59	9
	Kabat	---YITYDGRSAYNPSLKN	51 - 66	16
	Contact	WLGYITYDGRSA-------	48 - 59	12
	IMGT	----ITYDGRS--------	52 - 58	7
HFR3	Chothia	SAYNPSLKNRISITRDTSKNQFFLNLNSVTTEDTATYYCVD	58 - 98	41
	AbM	--YNPSLKNRISITRDTSKNQFFLNLNSVTTEDTATYYCVD	60 - 98	39
	Kabat	---------RISITRDTSKNQFFLNLNSVTTEDTATYYCVD	67 - 98	32
	Contact	--YNPSLKNRISITRDTSKNQFFLNLNSVTTEDTATYYC--	60 - 96	37
	IMGT	-AYNPSLKNRISITRDTSKNQFFLNLNSVTTEDTATYYC--	59 - 96	38
CDR-H3	Chothia	--WDN	99 - 101	3
	AbM	--WDN	99 - 101	3
	Kabat	--WDN	99 - 101	3
	Contact	VDWD-	97 - 100	4
	IMGT	VDWDN	97 - 101	5
HFR4	Chothia	-WGHGTTLTVSS	102 - 112	11
	AbM	-WGHGTTLTVSS	102 - 112	11
	Kabat	-WGHGTTLTVSS	102 - 112	11
	Contact	NWGHGTTLTVSS	101 - 112	12
	IMGT	-WGHGTTLTVSS	102 - 112	11

Accession & Annotations

Accession	AKR15657.1
Source	abYsis-EMBL-IG KP702268 Submitted 31-JUL-2015 Updated 23-JUN-2016
Name	anti-ITeAH antibody heavy chain variable region
Organism	Synthetic construct
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	Xu C. Submitted (27-JAN-2015) to the INSDC. Food Science, Key Laboratory of Food Quality and Safety, South China Agricultural University, Guangzhou, Guangdong 510642, China Xu C. 'Construction and characterization of a single-chain variable fragment against hydrazine hydrate derivative of the iso-tenuazonic acid' Unpublished.

Tools

Sequences

Amino Acid Sequence:

QVKLEQSGPGLVKPSQSLSLTCSVTGYSITSGYYWNWIRQFPGNKVEWLGYITYDGRSAY
NPSLKNRISITRDTSKNQFFLNLNSVTTEDTATYYCVDWDNWGHGTTLTVSSAKTTPP

DNA Sequence:

caagttaagctggagcagtcaggacctggcctcgtgaaaccttctcagtctctgtctctc
acctgctctgtcactggctactccatcaccagtggttattactggaactggatccggcag
tttccaggaaacaaagtggaatggctgggctacataacctacgacggtagaagtgcctat
aacccctctctcaaaaatcgtatctccatcactcgtgacacatctaagaaccagtttttc
ctgaatttgaattctgtgactactgaagacacagctacatattactgtgtggactgggac
aactggggccacggcaccactctcaccgtctcttcagccaaaacaacaccccca

Data Source:

Alignment settings:

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