abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGLVQPGGSLRLSCAASGFTFS	1 - 30	30
CDR-H1	KYPMS	31 - 35	5
HFR2	WVRQAPGKGLEWIS	36 - 49	14
CDR-H2	TITSTGASTTYADSVSG	50 - 66	17
HFR3	RFTISRDNAKNTLYLQMNSLKPEDTAVYYCRN	67 - 98	32
CDR-H3	SRGS	99 - 102	4
HFR4	RGQGTQVTVSS	103 - 113	11
			113

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	AbM	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	Kabat	QVQLQESGGGLVQPGGSLRLSCAASGFTFS	1 - 30	30
	Contact	QVQLQESGGGLVQPGGSLRLSCAASGFTF-	1 - 29	29
	IMGT	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
CDR-H1	Chothia	GFTFSKY---	26 - 32	7
	AbM	GFTFSKYPMS	26 - 35	10
	Kabat	-----KYPMS	31 - 35	5
	Contact	----SKYPMS	30 - 35	6
	IMGT	GFTFSKYP--	26 - 33	8
HFR2	Chothia	PMSWVRQAPGKGLEWISTI	33 - 51	19
	AbM	---WVRQAPGKGLEWIS--	36 - 49	14
	Kabat	---WVRQAPGKGLEWIS--	36 - 49	14
	Contact	---WVRQAPGKGLE-----	36 - 46	11
	IMGT	-MSWVRQAPGKGLEWIST-	34 - 50	17
CDR-H2	Chothia	-----TSTGAS---------	52 - 57	6
	AbM	---TITSTGASTT-------	50 - 59	10
	Kabat	---TITSTGASTTYADSVSG	50 - 66	17
	Contact	WISTITSTGASTT-------	47 - 59	13
	IMGT	----ITSTGAST--------	51 - 58	8
HFR3	Chothia	TTYADSVSGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCRN	58 - 98	41
	AbM	--YADSVSGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCRN	60 - 98	39
	Kabat	---------RFTISRDNAKNTLYLQMNSLKPEDTAVYYCRN	67 - 98	32
	Contact	--YADSVSGRFTISRDNAKNTLYLQMNSLKPEDTAVYYC--	60 - 96	37
	IMGT	-TYADSVSGRFTISRDNAKNTLYLQMNSLKPEDTAVYYC--	59 - 96	38
CDR-H3	Chothia	--SRGS	99 - 102	4
	AbM	--SRGS	99 - 102	4
	Kabat	--SRGS	99 - 102	4
	Contact	RNSRG-	97 - 101	5
	IMGT	RNSRGS	97 - 102	6
HFR4	Chothia	-RGQGTQVTVSS	103 - 113	11
	AbM	-RGQGTQVTVSS	103 - 113	11
	Kabat	-RGQGTQVTVSS	103 - 113	11
	Contact	SRGQGTQVTVSS	102 - 113	12
	IMGT	-RGQGTQVTVSS	103 - 113	11

Accession & Annotations

Accession	AXC07746.1
Source	abYsis-EMBL-IG MH492405 Submitted 24-JUL-2018 Updated 24-JUL-2018
Name	N3-2_antiAkt3PH-3AKH59
Organism	Cloning vector pdsg373
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	Glass D.S., Riedel-Kruse I.H. 'A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns' Cell 0:0-0(2018). Glass D.S. Submitted (14-JUN-2018) to the INSDC. Bioengineering, Stanford University, 318 Campus Drive, Clark Center E350, Stanford, CA 94305, USA

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGLVQPGGSLRLSCAASGFTFSKYPMSWVRQAPGKGLEWISTITSTGASTTY
ADSVSGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCRNSRGSRGQGTQVTVSS

DNA Sequence:

tggtgcaaaacctttgcggtatggcatgatagcgcctactagagaaagaggagaaatact
agatgtccagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgagg
tcggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagccta
cattgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgt
tagataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttac
gtaataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtac
atttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagcctttt
tatgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcatt
ttactttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaa
cacctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcacc
aaggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaac
aacttaaatgtgaaagtgggtcctaataatactagagccaggcatcaaataaaacgaaag
gctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctac
tagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagtcccta
tcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagaaag
aggagaaatactagatgattactcatggttgttatacccggacccggcacaagcataagc
taaaaaaaacattgattatgcttagtgctggtttaggattgtttttttatgttaatcaga
actcatttgcaaatggtgaaaattattttaaattgggttcggattcaaaactgttaactc
atgatagctatcagaatcgccttttttatacgttgaaaactggtgaaactgttgccgatc
tttctaaatcgcaagatattaatttatcgacgatttggtcgttgaataagcatttataca
gttctgaaagcgaaatgatgaaggccgcgcctggtcagcagatcattttgccactcaaaa
aacttccctttgaatacagtgcactaccacttttaggttcggcacctcttgttgctgcgg
gtggtgttgctggtcacacgaataaactgactaaaatgtccccggacgtgaccaaaagca
acatgaccgatgacaaggcattaaattatgcggcacaacaggcggcgagtctcggtagcc
agcttcagtcgcgatctctgaacggcgattacgcgaaagataccgctcttggtatcgctg
gtaaccaggcttcgtcacagttgcaggcctggttacaacattatggaacggcagaggtta
atctgcaaagtggtaataactttgacggtagttcactggacttcttattaccgttctatg
attccgaaaaaatgctggcatttggtcaggtcggagcgcgttacattgactcccgcttta
cggcaaatttaggtgcgggtcagcgttttttccttcctgcaaacatgttgggctataacg
tcttcattgatcaggatttttctggtgataatacccgtttaggtattggtggcgaatact
ggcgagactatttcaaaagtagcgttaacggctatttccgcatgagcggctggcatgagt
catacaataagaaagactatgatgagcgcccagcaaatggcttcgatatccgttttaatg
gctatctaccgtcatatccggcattaggcgccaagctgatatatgagcagtattatggtg
ataatgttgctttgtttaattctgataagctgcaatcgaatcctggtgcggcgaccgttg
gtgtaaactatactccgattcctctggtgacgatggggatcgattaccgtcatggtacgg
gtaatgaaaatgatctcctttactcaatgcagttccgttatcagtttgataaatcgtggt
ctcagcaaattgaaccacagtatgttaacgagttaagaacattatcaggcagccgttacg
atctggttcagcgtaataacaatattattctggagtacaagaagcaggatattctttctc
tgaatattccgcatgatattaatggtactgaacacagtacgcagaagattcagttgatcg
ttaagagcaaatacggtctggatcgtatcgtctgggatgatagtgcattacgcagtcagg
gcggtcagattcagcatagcggaagccaaagcgcacaagactaccaggctattttgcctg
cttatgtgcaaggtggcagcaatatttataaagtgacggctcgcgcctatgaccgtaatg
gcaatagctctaacaatgtacagcttactattaccgttctgtcgaatggtcaagttgtcg
accaggttggggtaacggactttacggcggataagacttcggctaaagcggataacgccg
ataccattacttataccgcgacggtgaaaaagaatggggtagctcaggctaatgtccctg
tttcatttaatattgtttcaggaactgcaactcttggggcaaatagtgccaaaacggatg
ctaacggtaaggcaaccgtaacgttgaagtcgagtacgccaggacaggtcgtcgtgtctg
ctaaaaccgcggagatgacttcagcacttaatgccagtgcggttatattttttgatggtg
cgactagacaggttcaattacaagagtcaggcggtggcttggtccagcccggcggctccc
tgcgcttgagctgtgcggcatcaggtttcacatttagtaaatacccaatgtcatgggttc
gtcaagctccgggtaaaggtttagaatggattagtacgatcacttccacgggtgcatcaa
ccacatatgctgactctgtatctggacgctttacgatctctcgcgataatgccaagaaca
ctttatatctgcaaatgaacagccttaaacctgaagacacagcggtctactactgtcgta
acagtcgtggttctcgtggacagggcacgcaggtgactgtgagttcttaataatactagt
agcggccgctgcagtccggcaaaaaagggcaaggtgtcaccaccctgccctttttcttta
aaaccgaaaagattacttcgcgttatgcaggcttcctcgctcactgactcgctgcgctcg
gtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatctcgagtcccgtc
aagtcagcgtaatgctctgccagtgttacaaccaattaaccaattctgattagaaaaact
catcgagcatcaaatgaaactgcaatttattcatatcaggattatcaataccatattttt
gaaaaagccgtttctgtaatgaaggagaaaactcaccgaggcagttccataggatggcaa
gatcctggtatcggtctgcgattccgactcgtccaacatcaatacaacctattaatttcc
cctcgtcaaaaataaggttatcaagtgagaaatcaccatgagtgacgactgaatccggtg
agaatggcaaaagcttatgcatttctttccagacttgttcaacaggccagccattacgct
cgtcatcaaaatcactcgcatcaaccaaaccgttattcattcgtgattgcgcctgagcga
gacgaaatacgcgatcgctgttaaaaggacaattacaaacaggaatcgaatgcaaccggc
gcaggaacactgccagcgcatcaacaatattttcacctgaatcaggatattcttctaata
cctggaatgctgttttcccggggatcgcagtggtgagtaaccatgcatcatcaggagtac
ggataaaatgcttgatggtcggaagaggcataaattccgtcagccagtttagtctgacca
tctcatctgtaacatcattggcaacgctacctttgccatgtttcagaaacaactctggcg
catcgggcttcccatacaatcgatagattgtcgcacctgattgcccgacattatcgcgag
cccatttatacccatataaatcagcatccatgttggaatttaatcgcggcctcgagcaag
acgtttcccgttgaatatggctcataacaccccttgtattactgtttatgtaagcagaca
gttttattgttcatgatgatatatttttatcttgtgcaatgtaacatcagagattttgag
acacaacgtggctttgttgaataaatcgaacttttgctgagttgaaggatcagatcacgc
atcttcccgacaacgcagaccgttccgtggcaaagcaaaagttcaaaatcaccaactggt
ccacctacaacaaagctctcatcaaccgtggctccctcactttctggctggatgatgggg
cgattcaggcctggtatgagtcagcaacaccttcttcacgaggcagacctcagcgctagc
ggagtgtatactggcttactatgttggcactgatgagggtgtcagtgaagtgcttcatgt
ggcaggagaaaaaaggctgcaccggtgcgtcagcagaatatgtgatacaggatatattcc
gcttcctcgctcactgactcgctacgctcggtcgttcgactgcggcgagcggaaatggct
tacgaacggggcggagatttcctggaagatgccaggaagatacttaacagggaagtgaga
gggccgcggcaaagccgtttttccataggctccgcccccctgacaagcatcacgaaatct
gacgctcaaatcagtggtggcgaaacccgacaggactataaagataccaggcgtttcccc
tggcggctccctcgtgcgctctcctgttcctgcctttcggtttaccggtgtcattccgct
gttatggccgcgtttgtctcattccacgcctgacactcagttccgggtaggcagttcgct
ccaagctggactgtatgcacgaaccccccgttcagtccgaccgctgcgccttatccggta
actatcgtcttgagtccaacccggaaagacatgcaaaagcaccactggcagcagccactg
gtaattgatttagaggagttagtcttgaagtcatgcgccggttaaggctaaactgaaagg
acaagttttggtgactgcgctcctccaagccagttacctcggttcaaagagttggtagct
cagagaaccttcgaaaaaccgccctgcaaggcggttttttcgttttcagagcaagagatt
acgcgcagaccaaaacgatctcaagaagatcatcttattaaggggtctgacgctcagtgg
aacgaaaactcacgttaagggattttggtcatgagattatcaaaaaggatcttcacctag
atccttttaaattaaaaatgaagttttaaatcaatctaaagtatatatgagtaaacttgg
tctgacagttaccaatgcttaatcagtgaggcacctatctcagcgatctgtctatttcgt
tcatccatagttgcctgactccccgtcgtgtagataactacgatacgggagggcttacca
tctggccccagtgctgcaatgataccgcgagacccacgctcaccggctccagatttatca
gcaataaaccagccagccggaagggccgagcgcagaagtggtcctgcaactttatccgcc
tccatccagtctattccatggtgccacctgacgtctaagaaaccattattatcatgacat
taacctataaaaataggcgtatcacgaggcagaatttcagataaaaaaaatccttagctt
tcgctaaggatgatttctggaattcgcggccgcttctagag

Data Source:

Alignment settings:

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