abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGLVQAGGSLRLSCAASGRAVS	1 - 30	30
CDR-H1	MYNMG	31 - 35	5
HFR2	WFRQAPGKEREFVA	36 - 49	14
CDR-H2	VISTASTYYVDSVKG	50 - 64	15
HFR3	RFTISRDYAKNAVYLQMNSLKPEDTAVYYCAA	65 - 96	32
CDR-H3	TLKTYRWPPTTYDY	97 - 110	14
HFR4	WGRGTQVTVSS	111 - 121	11
			121

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQAGGSLRLSCAAS-----	1 - 25	25
	AbM	QVQLQESGGGLVQAGGSLRLSCAAS-----	1 - 25	25
	Kabat	QVQLQESGGGLVQAGGSLRLSCAASGRAVS	1 - 30	30
	Contact	QVQLQESGGGLVQAGGSLRLSCAASGRAV-	1 - 29	29
	IMGT	QVQLQESGGGLVQAGGSLRLSCAAS-----	1 - 25	25
CDR-H1	Chothia	GRAVSMY---	26 - 32	7
	AbM	GRAVSMYNMG	26 - 35	10
	Kabat	-----MYNMG	31 - 35	5
	Contact	----SMYNMG	30 - 35	6
	IMGT	GRAVSMYN--	26 - 33	8
HFR2	Chothia	NMGWFRQAPGKEREFVAVI	33 - 51	19
	AbM	---WFRQAPGKEREFVA--	36 - 49	14
	Kabat	---WFRQAPGKEREFVA--	36 - 49	14
	Contact	---WFRQAPGKERE-----	36 - 46	11
	IMGT	-MGWFRQAPGKEREFVAV-	34 - 50	17
CDR-H2	Chothia	-----STAS---------	52 - 55	4
	AbM	---VISTASTY-------	50 - 57	8
	Kabat	---VISTASTYYVDSVKG	50 - 64	15
	Contact	FVAVISTASTY-------	47 - 57	11
	IMGT	----ISTAST--------	51 - 56	6
HFR3	Chothia	TYYVDSVKGRFTISRDYAKNAVYLQMNSLKPEDTAVYYCAA	56 - 96	41
	AbM	--YVDSVKGRFTISRDYAKNAVYLQMNSLKPEDTAVYYCAA	58 - 96	39
	Kabat	---------RFTISRDYAKNAVYLQMNSLKPEDTAVYYCAA	65 - 96	32
	Contact	--YVDSVKGRFTISRDYAKNAVYLQMNSLKPEDTAVYYC--	58 - 94	37
	IMGT	-YYVDSVKGRFTISRDYAKNAVYLQMNSLKPEDTAVYYC--	57 - 94	38
CDR-H3	Chothia	--TLKTYRWPPTTYDY	97 - 110	14
	AbM	--TLKTYRWPPTTYDY	97 - 110	14
	Kabat	--TLKTYRWPPTTYDY	97 - 110	14
	Contact	AATLKTYRWPPTTYD-	95 - 109	15
	IMGT	AATLKTYRWPPTTYDY	95 - 110	16
HFR4	Chothia	-WGRGTQVTVSS	111 - 121	11
	AbM	-WGRGTQVTVSS	111 - 121	11
	Kabat	-WGRGTQVTVSS	111 - 121	11
	Contact	YWGRGTQVTVSS	110 - 121	12
	IMGT	-WGRGTQVTVSS	111 - 121	11

Accession & Annotations

Accession	AXC07762.1
Source	abYsis-EMBL-IG MH492409 Submitted 24-JUL-2018 Updated 24-JUL-2018
Name	N8-5_antiP53TA-R3P3
Organism	Cloning vector pdsg402
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	Glass D.S., Riedel-Kruse I.H. 'A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns' Cell 0:0-0(2018). Glass D.S. Submitted (14-JUN-2018) to the INSDC. Bioengineering, Stanford University, 318 Campus Drive, Clark Center E350, Stanford, CA 94305, USA

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGLVQAGGSLRLSCAASGRAVSMYNMGWFRQAPGKEREFVAVISTASTYYVD
SVKGRFTISRDYAKNAVYLQMNSLKPEDTAVYYCAATLKTYRWPPTTYDYWGRGTQVTVS
S

DNA Sequence:

tggtgcaaaacctttgcggtatggcatgatagcgcctactagagaaagaggagaaatact
agatgtccagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgagg
tcggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagccta
cattgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgt
tagataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttac
gtaataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtac
atttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagcctttt
tatgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcatt
ttactttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaa
cacctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcacc
aaggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaac
aacttaaatgtgaaagtgggtcctaataatactagagccaggcatcaaataaaacgaaag
gctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctac
tagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagtcccta
tcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagaaag
aggagaaatactagatgattactcatggttgttatacccggacccggcacaagcataagc
taaaaaaaacattgattatgcttagtgctggtttaggattgtttttttatgttaatcaga
actcatttgcaaatggtgaaaattattttaaattgggttcggattcaaaactgttaactc
atgatagctatcagaatcgccttttttatacgttgaaaactggtgaaactgttgccgatc
tttctaaatcgcaagatattaatttatcgacgatttggtcgttgaataagcatttataca
gttctgaaagcgaaatgatgaaggccgcgcctggtcagcagatcattttgccactcaaaa
aacttccctttgaatacagtgcactaccacttttaggttcggcacctcttgttgctgcgg
gtggtgttgctggtcacacgaataaactgactaaaatgtccccggacgtgaccaaaagca
acatgaccgatgacaaggcattaaattatgcggcacaacaggcggcgagtctcggtagcc
agcttcagtcgcgatctctgaacggcgattacgcgaaagataccgctcttggtatcgctg
gtaaccaggcttcgtcacagttgcaggcctggttacaacattatggaacggcagaggtta
atctgcaaagtggtaataactttgacggtagttcactggacttcttattaccgttctatg
attccgaaaaaatgctggcatttggtcaggtcggagcgcgttacattgactcccgcttta
cggcaaatttaggtgcgggtcagcgttttttccttcctgcaaacatgttgggctataacg
tcttcattgatcaggatttttctggtgataatacccgtttaggtattggtggcgaatact
ggcgagactatttcaaaagtagcgttaacggctatttccgcatgagcggctggcatgagt
catacaataagaaagactatgatgagcgcccagcaaatggcttcgatatccgttttaatg
gctatctaccgtcatatccggcattaggcgccaagctgatatatgagcagtattatggtg
ataatgttgctttgtttaattctgataagctgcaatcgaatcctggtgcggcgaccgttg
gtgtaaactatactccgattcctctggtgacgatggggatcgattaccgtcatggtacgg
gtaatgaaaatgatctcctttactcaatgcagttccgttatcagtttgataaatcgtggt
ctcagcaaattgaaccacagtatgttaacgagttaagaacattatcaggcagccgttacg
atctggttcagcgtaataacaatattattctggagtacaagaagcaggatattctttctc
tgaatattccgcatgatattaatggtactgaacacagtacgcagaagattcagttgatcg
ttaagagcaaatacggtctggatcgtatcgtctgggatgatagtgcattacgcagtcagg
gcggtcagattcagcatagcggaagccaaagcgcacaagactaccaggctattttgcctg
cttatgtgcaaggtggcagcaatatttataaagtgacggctcgcgcctatgaccgtaatg
gcaatagctctaacaatgtacagcttactattaccgttctgtcgaatggtcaagttgtcg
accaggttggggtaacggactttacggcggataagacttcggctaaagcggataacgccg
ataccattacttataccgcgacggtgaaaaagaatggggtagctcaggctaatgtccctg
tttcatttaatattgtttcaggaactgcaactcttggggcaaatagtgccaaaacggatg
ctaacggtaaggcaaccgtaacgttgaagtcgagtacgccaggacaggtcgtcgtgtctg
ctaaaaccgcggagatgacttcagcacttaatgccagtgcggttatattttttgatggtg
cgactagacaggtgcagttacaggaatccggagggggtttggttcaggccgggggaagtt
tgcgcttatcctgtgcggcgtccggtcgcgctgtgtctatgtataacatggggtggtttc
gtcaggctccgggtaaggagcgtgagtttgtagccgtcatttcgacagcaagcacgtatt
atgttgactccgtaaagggccgctttaccatttcacgcgattacgccaaaaacgcagtgt
atttgcagatgaactctttaaaacccgaggacaccgccgtttattattgcgcggcgactt
taaaaacgtaccgctggcccccgactacatacgattattgggggcgtggtactcaggtta
ccgtaagtagttaataatactagtagcggccgctgcagtccggcaaaaaagggcaaggtg
tcaccaccctgccctttttctttaaaaccgaaaagattacttcgcgttatgcaggcttcc
tcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactca
aaggcggtaatctcgagtcccgtcaagtcagcgtaatgctctgccagtgttacaaccaat
taaccaattctgattagaaaaactcatcgagcatcaaatgaaactgcaatttattcatat
caggattatcaataccatatttttgaaaaagccgtttctgtaatgaaggagaaaactcac
cgaggcagttccataggatggcaagatcctggtatcggtctgcgattccgactcgtccaa
catcaatacaacctattaatttcccctcgtcaaaaataaggttatcaagtgagaaatcac
catgagtgacgactgaatccggtgagaatggcaaaagcttatgcatttctttccagactt
gttcaacaggccagccattacgctcgtcatcaaaatcactcgcatcaaccaaaccgttat
tcattcgtgattgcgcctgagcgagacgaaatacgcgatcgctgttaaaaggacaattac
aaacaggaatcgaatgcaaccggcgcaggaacactgccagcgcatcaacaatattttcac
ctgaatcaggatattcttctaatacctggaatgctgttttcccggggatcgcagtggtga
gtaaccatgcatcatcaggagtacggataaaatgcttgatggtcggaagaggcataaatt
ccgtcagccagtttagtctgaccatctcatctgtaacatcattggcaacgctacctttgc
catgtttcagaaacaactctggcgcatcgggcttcccatacaatcgatagattgtcgcac
ctgattgcccgacattatcgcgagcccatttatacccatataaatcagcatccatgttgg
aatttaatcgcggcctcgagcaagacgtttcccgttgaatatggctcataacaccccttg
tattactgtttatgtaagcagacagttttattgttcatgatgatatatttttatcttgtg
caatgtaacatcagagattttgagacacaacgtggctttgttgaataaatcgaacttttg
ctgagttgaaggatcagatcacgcatcttcccgacaacgcagaccgttccgtggcaaagc
aaaagttcaaaatcaccaactggtccacctacaacaaagctctcatcaaccgtggctccc
tcactttctggctggatgatggggcgattcaggcctggtatgagtcagcaacaccttctt
cacgaggcagacctcagcgctagcggagtgtatactggcttactatgttggcactgatga
gggtgtcagtgaagtgcttcatgtggcaggagaaaaaaggctgcaccggtgcgtcagcag
aatatgtgatacaggatatattccgcttcctcgctcactgactcgctacgctcggtcgtt
cgactgcggcgagcggaaatggcttacgaacggggcggagatttcctggaagatgccagg
aagatacttaacagggaagtgagagggccgcggcaaagccgtttttccataggctccgcc
cccctgacaagcatcacgaaatctgacgctcaaatcagtggtggcgaaacccgacaggac
tataaagataccaggcgtttcccctggcggctccctcgtgcgctctcctgttcctgcctt
tcggtttaccggtgtcattccgctgttatggccgcgtttgtctcattccacgcctgacac
tcagttccgggtaggcagttcgctccaagctggactgtatgcacgaaccccccgttcagt
ccgaccgctgcgccttatccggtaactatcgtcttgagtccaacccggaaagacatgcaa
aagcaccactggcagcagccactggtaattgatttagaggagttagtcttgaagtcatgc
gccggttaaggctaaactgaaaggacaagttttggtgactgcgctcctccaagccagtta
cctcggttcaaagagttggtagctcagagaaccttcgaaaaaccgccctgcaaggcggtt
ttttcgttttcagagcaagagattacgcgcagaccaaaacgatctcaagaagatcatctt
attaaggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatgaga
ttatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaatc
taaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcacct
atctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtagata
actacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagaccca
cgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgcaga
agtggtcctgcaactttatccgcctccatccagtctattccatggtgccacctgacgtct
aagaaaccattattatcatgacattaacctataaaaataggcgtatcacgaggcagaatt
tcagataaaaaaaatccttagctttcgctaaggatgatttctggaattcgcggccgcttc
tagag

Data Source:

Alignment settings:

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