abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGLVQAGGSLRLSCAASGRTFS	1 - 30	30
CDR-H1	DYAMG	31 - 35	5
HFR2	WFRQAPGKEREFVA	36 - 49	14
CDR-H2	AINWSGGRTYYADSVKG	50 - 66	17
HFR3	RFAISRDNAKNTVYLQMNSLKPEDTAVYYCAA	67 - 98	32
CDR-H3	RRGGGSGSY	99 - 107	9
HFR4	WGQGTQVTVSS	108 - 118	11
			118

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQAGGSLRLSCAAS-----	1 - 25	25
	AbM	QVQLQESGGGLVQAGGSLRLSCAAS-----	1 - 25	25
	Kabat	QVQLQESGGGLVQAGGSLRLSCAASGRTFS	1 - 30	30
	Contact	QVQLQESGGGLVQAGGSLRLSCAASGRTF-	1 - 29	29
	IMGT	QVQLQESGGGLVQAGGSLRLSCAAS-----	1 - 25	25
CDR-H1	Chothia	GRTFSDY---	26 - 32	7
	AbM	GRTFSDYAMG	26 - 35	10
	Kabat	-----DYAMG	31 - 35	5
	Contact	----SDYAMG	30 - 35	6
	IMGT	GRTFSDYA--	26 - 33	8
HFR2	Chothia	AMGWFRQAPGKEREFVAAI	33 - 51	19
	AbM	---WFRQAPGKEREFVA--	36 - 49	14
	Kabat	---WFRQAPGKEREFVA--	36 - 49	14
	Contact	---WFRQAPGKERE-----	36 - 46	11
	IMGT	-MGWFRQAPGKEREFVAA-	34 - 50	17
CDR-H2	Chothia	-----NWSGGR---------	52 - 57	6
	AbM	---AINWSGGRTY-------	50 - 59	10
	Kabat	---AINWSGGRTYYADSVKG	50 - 66	17
	Contact	FVAAINWSGGRTY-------	47 - 59	13
	IMGT	----INWSGGRT--------	51 - 58	8
HFR3	Chothia	TYYADSVKGRFAISRDNAKNTVYLQMNSLKPEDTAVYYCAA	58 - 98	41
	AbM	--YADSVKGRFAISRDNAKNTVYLQMNSLKPEDTAVYYCAA	60 - 98	39
	Kabat	---------RFAISRDNAKNTVYLQMNSLKPEDTAVYYCAA	67 - 98	32
	Contact	--YADSVKGRFAISRDNAKNTVYLQMNSLKPEDTAVYYC--	60 - 96	37
	IMGT	-YYADSVKGRFAISRDNAKNTVYLQMNSLKPEDTAVYYC--	59 - 96	38
CDR-H3	Chothia	--RRGGGSGSY	99 - 107	9
	AbM	--RRGGGSGSY	99 - 107	9
	Kabat	--RRGGGSGSY	99 - 107	9
	Contact	AARRGGGSGS-	97 - 106	10
	IMGT	AARRGGGSGSY	97 - 107	11
HFR4	Chothia	-WGQGTQVTVSS	108 - 118	11
	AbM	-WGQGTQVTVSS	108 - 118	11
	Kabat	-WGQGTQVTVSS	108 - 118	11
	Contact	YWGQGTQVTVSS	107 - 118	12
	IMGT	-WGQGTQVTVSS	108 - 118	11

Accession & Annotations

Accession	AXC07786.1
Source	abYsis-EMBL-IG MH492415 Submitted 24-JUL-2018 Updated 24-JUL-2018
Name	N8-4_antiP53TA-R3P9
Organism	Cloning vector pdsg401
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	Glass D.S., Riedel-Kruse I.H. 'A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns' Cell 0:0-0(2018). Glass D.S. Submitted (14-JUN-2018) to the INSDC. Bioengineering, Stanford University, 318 Campus Drive, Clark Center E350, Stanford, CA 94305, USA

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGLVQAGGSLRLSCAASGRTFSDYAMGWFRQAPGKEREFVAAINWSGGRTYY
ADSVKGRFAISRDNAKNTVYLQMNSLKPEDTAVYYCAARRGGGSGSYWGQGTQVTVSS

DNA Sequence:

tggtgcaaaacctttgcggtatggcatgatagcgcctactagagaaagaggagaaatact
agatgtccagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgagg
tcggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagccta
cattgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgt
tagataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttac
gtaataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtac
atttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagcctttt
tatgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcatt
ttactttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaa
cacctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcacc
aaggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaac
aacttaaatgtgaaagtgggtcctaataatactagagccaggcatcaaataaaacgaaag
gctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctac
tagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagtcccta
tcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagaaag
aggagaaatactagatgattactcatggttgttatacccggacccggcacaagcataagc
taaaaaaaacattgattatgcttagtgctggtttaggattgtttttttatgttaatcaga
actcatttgcaaatggtgaaaattattttaaattgggttcggattcaaaactgttaactc
atgatagctatcagaatcgccttttttatacgttgaaaactggtgaaactgttgccgatc
tttctaaatcgcaagatattaatttatcgacgatttggtcgttgaataagcatttataca
gttctgaaagcgaaatgatgaaggccgcgcctggtcagcagatcattttgccactcaaaa
aacttccctttgaatacagtgcactaccacttttaggttcggcacctcttgttgctgcgg
gtggtgttgctggtcacacgaataaactgactaaaatgtccccggacgtgaccaaaagca
acatgaccgatgacaaggcattaaattatgcggcacaacaggcggcgagtctcggtagcc
agcttcagtcgcgatctctgaacggcgattacgcgaaagataccgctcttggtatcgctg
gtaaccaggcttcgtcacagttgcaggcctggttacaacattatggaacggcagaggtta
atctgcaaagtggtaataactttgacggtagttcactggacttcttattaccgttctatg
attccgaaaaaatgctggcatttggtcaggtcggagcgcgttacattgactcccgcttta
cggcaaatttaggtgcgggtcagcgttttttccttcctgcaaacatgttgggctataacg
tcttcattgatcaggatttttctggtgataatacccgtttaggtattggtggcgaatact
ggcgagactatttcaaaagtagcgttaacggctatttccgcatgagcggctggcatgagt
catacaataagaaagactatgatgagcgcccagcaaatggcttcgatatccgttttaatg
gctatctaccgtcatatccggcattaggcgccaagctgatatatgagcagtattatggtg
ataatgttgctttgtttaattctgataagctgcaatcgaatcctggtgcggcgaccgttg
gtgtaaactatactccgattcctctggtgacgatggggatcgattaccgtcatggtacgg
gtaatgaaaatgatctcctttactcaatgcagttccgttatcagtttgataaatcgtggt
ctcagcaaattgaaccacagtatgttaacgagttaagaacattatcaggcagccgttacg
atctggttcagcgtaataacaatattattctggagtacaagaagcaggatattctttctc
tgaatattccgcatgatattaatggtactgaacacagtacgcagaagattcagttgatcg
ttaagagcaaatacggtctggatcgtatcgtctgggatgatagtgcattacgcagtcagg
gcggtcagattcagcatagcggaagccaaagcgcacaagactaccaggctattttgcctg
cttatgtgcaaggtggcagcaatatttataaagtgacggctcgcgcctatgaccgtaatg
gcaatagctctaacaatgtacagcttactattaccgttctgtcgaatggtcaagttgtcg
accaggttggggtaacggactttacggcggataagacttcggctaaagcggataacgccg
ataccattacttataccgcgacggtgaaaaagaatggggtagctcaggctaatgtccctg
tttcatttaatattgtttcaggaactgcaactcttggggcaaatagtgccaaaacggatg
ctaacggtaaggcaaccgtaacgttgaagtcgagtacgccaggacaggtcgtcgtgtctg
ctaaaaccgcggagatgacttcagcacttaatgccagtgcggttatattttttgatggtg
cgactagacaggttcagttacaagaaagcggggggggacttgtccaagcgggtggctccc
tgcgcctgtcatgcgccgcatccggccgtacgtttagcgattatgcaatgggctggttcc
gccaggcacctggcaaagaacgtgagtttgtggccgcgatcaactggtcaggaggccgca
cgtactacgcagacagtgtaaaaggacgtttcgcgatttcgcgtgacaacgcaaaaaaca
ccgtgtatctgcaaatgaactcgcttaaacctgaagataccgcagtctactattgtgcag
cccgtcgtgggggtggcagcgggagctactggggacaggggacacaggttacggtaagtt
cgtaataatactagtagcggccgctgcagtccggcaaaaaagggcaaggtgtcaccaccc
tgccctttttctttaaaaccgaaaagattacttcgcgttatgcaggcttcctcgctcact
gactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggta
atctcgagtcccgtcaagtcagcgtaatgctctgccagtgttacaaccaattaaccaatt
ctgattagaaaaactcatcgagcatcaaatgaaactgcaatttattcatatcaggattat
caataccatatttttgaaaaagccgtttctgtaatgaaggagaaaactcaccgaggcagt
tccataggatggcaagatcctggtatcggtctgcgattccgactcgtccaacatcaatac
aacctattaatttcccctcgtcaaaaataaggttatcaagtgagaaatcaccatgagtga
cgactgaatccggtgagaatggcaaaagcttatgcatttctttccagacttgttcaacag
gccagccattacgctcgtcatcaaaatcactcgcatcaaccaaaccgttattcattcgtg
attgcgcctgagcgagacgaaatacgcgatcgctgttaaaaggacaattacaaacaggaa
tcgaatgcaaccggcgcaggaacactgccagcgcatcaacaatattttcacctgaatcag
gatattcttctaatacctggaatgctgttttcccggggatcgcagtggtgagtaaccatg
catcatcaggagtacggataaaatgcttgatggtcggaagaggcataaattccgtcagcc
agtttagtctgaccatctcatctgtaacatcattggcaacgctacctttgccatgtttca
gaaacaactctggcgcatcgggcttcccatacaatcgatagattgtcgcacctgattgcc
cgacattatcgcgagcccatttatacccatataaatcagcatccatgttggaatttaatc
gcggcctcgagcaagacgtttcccgttgaatatggctcataacaccccttgtattactgt
ttatgtaagcagacagttttattgttcatgatgatatatttttatcttgtgcaatgtaac
atcagagattttgagacacaacgtggctttgttgaataaatcgaacttttgctgagttga
aggatcagatcacgcatcttcccgacaacgcagaccgttccgtggcaaagcaaaagttca
aaatcaccaactggtccacctacaacaaagctctcatcaaccgtggctccctcactttct
ggctggatgatggggcgattcaggcctggtatgagtcagcaacaccttcttcacgaggca
gacctcagcgctagcggagtgtatactggcttactatgttggcactgatgagggtgtcag
tgaagtgcttcatgtggcaggagaaaaaaggctgcaccggtgcgtcagcagaatatgtga
tacaggatatattccgcttcctcgctcactgactcgctacgctcggtcgttcgactgcgg
cgagcggaaatggcttacgaacggggcggagatttcctggaagatgccaggaagatactt
aacagggaagtgagagggccgcggcaaagccgtttttccataggctccgcccccctgaca
agcatcacgaaatctgacgctcaaatcagtggtggcgaaacccgacaggactataaagat
accaggcgtttcccctggcggctccctcgtgcgctctcctgttcctgcctttcggtttac
cggtgtcattccgctgttatggccgcgtttgtctcattccacgcctgacactcagttccg
ggtaggcagttcgctccaagctggactgtatgcacgaaccccccgttcagtccgaccgct
gcgccttatccggtaactatcgtcttgagtccaacccggaaagacatgcaaaagcaccac
tggcagcagccactggtaattgatttagaggagttagtcttgaagtcatgcgccggttaa
ggctaaactgaaaggacaagttttggtgactgcgctcctccaagccagttacctcggttc
aaagagttggtagctcagagaaccttcgaaaaaccgccctgcaaggcggttttttcgttt
tcagagcaagagattacgcgcagaccaaaacgatctcaagaagatcatcttattaagggg
tctgacgctcagtggaacgaaaactcacgttaagggattttggtcatgagattatcaaaa
aggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaatctaaagtata
tatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcacctatctcagcg
atctgtctatttcgttcatccatagttgcctgactccccgtcgtgtagataactacgata
cgggagggcttaccatctggccccagtgctgcaatgataccgcgagacccacgctcaccg
gctccagatttatcagcaataaaccagccagccggaagggccgagcgcagaagtggtcct
gcaactttatccgcctccatccagtctattccatggtgccacctgacgtctaagaaacca
ttattatcatgacattaacctataaaaataggcgtatcacgaggcagaatttcagataaa
aaaaatccttagctttcgctaaggatgatttctggaattcgcggccgcttctagag

Data Source:

Alignment settings:

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