abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	DVQLVEFGGGLVQPGGSLRLSCAASGFTFS	1 - 30	30
CDR-H1	SYYMS	31 - 35	5
HFR2	WARQAPGKGPEWVS	36 - 49	14
CDR-H2	TINTGGGRMGYADSVKG	50 - 66	17
HFR3	RFTISRDNTKNTLYLQMNSLKPEDTALYYCAR	67 - 98	32
CDR-H3	GDYDDSLRRRY	99 - 109	11
HFR4	WGQGTQVTVSS	110 - 120	11
			120

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	DVQLVEFGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	AbM	DVQLVEFGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	Kabat	DVQLVEFGGGLVQPGGSLRLSCAASGFTFS	1 - 30	30
	Contact	DVQLVEFGGGLVQPGGSLRLSCAASGFTF-	1 - 29	29
	IMGT	DVQLVEFGGGLVQPGGSLRLSCAAS-----	1 - 25	25
CDR-H1	Chothia	GFTFSSY---	26 - 32	7
	AbM	GFTFSSYYMS	26 - 35	10
	Kabat	-----SYYMS	31 - 35	5
	Contact	----SSYYMS	30 - 35	6
	IMGT	GFTFSSYY--	26 - 33	8
HFR2	Chothia	YMSWARQAPGKGPEWVSTI	33 - 51	19
	AbM	---WARQAPGKGPEWVS--	36 - 49	14
	Kabat	---WARQAPGKGPEWVS--	36 - 49	14
	Contact	---WARQAPGKGPE-----	36 - 46	11
	IMGT	-MSWARQAPGKGPEWVST-	34 - 50	17
CDR-H2	Chothia	-----NTGGGR---------	52 - 57	6
	AbM	---TINTGGGRMG-------	50 - 59	10
	Kabat	---TINTGGGRMGYADSVKG	50 - 66	17
	Contact	WVSTINTGGGRMG-------	47 - 59	13
	IMGT	----INTGGGRM--------	51 - 58	8
HFR3	Chothia	MGYADSVKGRFTISRDNTKNTLYLQMNSLKPEDTALYYCAR	58 - 98	41
	AbM	--YADSVKGRFTISRDNTKNTLYLQMNSLKPEDTALYYCAR	60 - 98	39
	Kabat	---------RFTISRDNTKNTLYLQMNSLKPEDTALYYCAR	67 - 98	32
	Contact	--YADSVKGRFTISRDNTKNTLYLQMNSLKPEDTALYYC--	60 - 96	37
	IMGT	-GYADSVKGRFTISRDNTKNTLYLQMNSLKPEDTALYYC--	59 - 96	38
CDR-H3	Chothia	--GDYDDSLRRRY	99 - 109	11
	AbM	--GDYDDSLRRRY	99 - 109	11
	Kabat	--GDYDDSLRRRY	99 - 109	11
	Contact	ARGDYDDSLRRR-	97 - 108	12
	IMGT	ARGDYDDSLRRRY	97 - 109	13
HFR4	Chothia	-WGQGTQVTVSS	110 - 120	11
	AbM	-WGQGTQVTVSS	110 - 120	11
	Kabat	-WGQGTQVTVSS	110 - 120	11
	Contact	YWGQGTQVTVSS	109 - 120	12
	IMGT	-WGQGTQVTVSS	110 - 120	11

Accession & Annotations

Accession	AXC07790.1
Source	abYsis-EMBL-IG MH492416 Submitted 24-JUL-2018 Updated 24-JUL-2018
Name	N6-2_antimelanophilin-2MEL24
Organism	Cloning vector pdsg378
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	Glass D.S., Riedel-Kruse I.H. 'A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns' Cell 0:0-0(2018). Glass D.S. Submitted (14-JUN-2018) to the INSDC. Bioengineering, Stanford University, 318 Campus Drive, Clark Center E350, Stanford, CA 94305, USA

Tools

Sequences

Amino Acid Sequence:

DVQLVEFGGGLVQPGGSLRLSCAASGFTFSSYYMSWARQAPGKGPEWVSTINTGGGRMGY
ADSVKGRFTISRDNTKNTLYLQMNSLKPEDTALYYCARGDYDDSLRRRYWGQGTQVTVSS

DNA Sequence:

tggtgcaaaacctttgcggtatggcatgatagcgcctactagagaaagaggagaaatact
agatgtccagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgagg
tcggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagccta
cattgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgt
tagataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttac
gtaataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtac
atttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagcctttt
tatgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcatt
ttactttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaa
cacctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcacc
aaggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaac
aacttaaatgtgaaagtgggtcctaataatactagagccaggcatcaaataaaacgaaag
gctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctac
tagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagtcccta
tcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagaaag
aggagaaatactagatgattactcatggttgttatacccggacccggcacaagcataagc
taaaaaaaacattgattatgcttagtgctggtttaggattgtttttttatgttaatcaga
actcatttgcaaatggtgaaaattattttaaattgggttcggattcaaaactgttaactc
atgatagctatcagaatcgccttttttatacgttgaaaactggtgaaactgttgccgatc
tttctaaatcgcaagatattaatttatcgacgatttggtcgttgaataagcatttataca
gttctgaaagcgaaatgatgaaggccgcgcctggtcagcagatcattttgccactcaaaa
aacttccctttgaatacagtgcactaccacttttaggttcggcacctcttgttgctgcgg
gtggtgttgctggtcacacgaataaactgactaaaatgtccccggacgtgaccaaaagca
acatgaccgatgacaaggcattaaattatgcggcacaacaggcggcgagtctcggtagcc
agcttcagtcgcgatctctgaacggcgattacgcgaaagataccgctcttggtatcgctg
gtaaccaggcttcgtcacagttgcaggcctggttacaacattatggaacggcagaggtta
atctgcaaagtggtaataactttgacggtagttcactggacttcttattaccgttctatg
attccgaaaaaatgctggcatttggtcaggtcggagcgcgttacattgactcccgcttta
cggcaaatttaggtgcgggtcagcgttttttccttcctgcaaacatgttgggctataacg
tcttcattgatcaggatttttctggtgataatacccgtttaggtattggtggcgaatact
ggcgagactatttcaaaagtagcgttaacggctatttccgcatgagcggctggcatgagt
catacaataagaaagactatgatgagcgcccagcaaatggcttcgatatccgttttaatg
gctatctaccgtcatatccggcattaggcgccaagctgatatatgagcagtattatggtg
ataatgttgctttgtttaattctgataagctgcaatcgaatcctggtgcggcgaccgttg
gtgtaaactatactccgattcctctggtgacgatggggatcgattaccgtcatggtacgg
gtaatgaaaatgatctcctttactcaatgcagttccgttatcagtttgataaatcgtggt
ctcagcaaattgaaccacagtatgttaacgagttaagaacattatcaggcagccgttacg
atctggttcagcgtaataacaatattattctggagtacaagaagcaggatattctttctc
tgaatattccgcatgatattaatggtactgaacacagtacgcagaagattcagttgatcg
ttaagagcaaatacggtctggatcgtatcgtctgggatgatagtgcattacgcagtcagg
gcggtcagattcagcatagcggaagccaaagcgcacaagactaccaggctattttgcctg
cttatgtgcaaggtggcagcaatatttataaagtgacggctcgcgcctatgaccgtaatg
gcaatagctctaacaatgtacagcttactattaccgttctgtcgaatggtcaagttgtcg
accaggttggggtaacggactttacggcggataagacttcggctaaagcggataacgccg
ataccattacttataccgcgacggtgaaaaagaatggggtagctcaggctaatgtccctg
tttcatttaatattgtttcaggaactgcaactcttggggcaaatagtgccaaaacggatg
ctaacggtaaggcaaccgtaacgttgaagtcgagtacgccaggacaggtcgtcgtgtctg
ctaaaaccgcggagatgacttcagcacttaatgccagtgcggttatattttttgatggtg
cgactagagatgttcagttagtggagtttggcggcggccttgtccagcctgggggatcat
tgcgtcttagttgtgccgcttcgggcttcactttttcatcatattatatgtcgtgggctc
gccaagctcctggaaaaggtccagaatgggtttctactatcaatacggggggaggtcgca
tgggttatgcagactccgtaaaggggcgctttaccatttctcgcgacaatacgaagaata
cactgtatctgcaaatgaacagtttgaagcctgaagacactgcactttattattgtgctc
gcggggactacgacgatagtcttcgtcgtcgttactggggacagggcacgcaagtgaccg
tttcgagctaataatactagtagcggccgctgcagtccggcaaaaaagggcaaggtgtca
ccaccctgccctttttctttaaaaccgaaaagattacttcgcgttatgcaggcttcctcg
ctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaag
gcggtaatctcgagtcccgtcaagtcagcgtaatgctctgccagtgttacaaccaattaa
ccaattctgattagaaaaactcatcgagcatcaaatgaaactgcaatttattcatatcag
gattatcaataccatatttttgaaaaagccgtttctgtaatgaaggagaaaactcaccga
ggcagttccataggatggcaagatcctggtatcggtctgcgattccgactcgtccaacat
caatacaacctattaatttcccctcgtcaaaaataaggttatcaagtgagaaatcaccat
gagtgacgactgaatccggtgagaatggcaaaagcttatgcatttctttccagacttgtt
caacaggccagccattacgctcgtcatcaaaatcactcgcatcaaccaaaccgttattca
ttcgtgattgcgcctgagcgagacgaaatacgcgatcgctgttaaaaggacaattacaaa
caggaatcgaatgcaaccggcgcaggaacactgccagcgcatcaacaatattttcacctg
aatcaggatattcttctaatacctggaatgctgttttcccggggatcgcagtggtgagta
accatgcatcatcaggagtacggataaaatgcttgatggtcggaagaggcataaattccg
tcagccagtttagtctgaccatctcatctgtaacatcattggcaacgctacctttgccat
gtttcagaaacaactctggcgcatcgggcttcccatacaatcgatagattgtcgcacctg
attgcccgacattatcgcgagcccatttatacccatataaatcagcatccatgttggaat
ttaatcgcggcctcgagcaagacgtttcccgttgaatatggctcataacaccccttgtat
tactgtttatgtaagcagacagttttattgttcatgatgatatatttttatcttgtgcaa
tgtaacatcagagattttgagacacaacgtggctttgttgaataaatcgaacttttgctg
agttgaaggatcagatcacgcatcttcccgacaacgcagaccgttccgtggcaaagcaaa
agttcaaaatcaccaactggtccacctacaacaaagctctcatcaaccgtggctccctca
ctttctggctggatgatggggcgattcaggcctggtatgagtcagcaacaccttcttcac
gaggcagacctcagcgctagcggagtgtatactggcttactatgttggcactgatgaggg
tgtcagtgaagtgcttcatgtggcaggagaaaaaaggctgcaccggtgcgtcagcagaat
atgtgatacaggatatattccgcttcctcgctcactgactcgctacgctcggtcgttcga
ctgcggcgagcggaaatggcttacgaacggggcggagatttcctggaagatgccaggaag
atacttaacagggaagtgagagggccgcggcaaagccgtttttccataggctccgccccc
ctgacaagcatcacgaaatctgacgctcaaatcagtggtggcgaaacccgacaggactat
aaagataccaggcgtttcccctggcggctccctcgtgcgctctcctgttcctgcctttcg
gtttaccggtgtcattccgctgttatggccgcgtttgtctcattccacgcctgacactca
gttccgggtaggcagttcgctccaagctggactgtatgcacgaaccccccgttcagtccg
accgctgcgccttatccggtaactatcgtcttgagtccaacccggaaagacatgcaaaag
caccactggcagcagccactggtaattgatttagaggagttagtcttgaagtcatgcgcc
ggttaaggctaaactgaaaggacaagttttggtgactgcgctcctccaagccagttacct
cggttcaaagagttggtagctcagagaaccttcgaaaaaccgccctgcaaggcggttttt
tcgttttcagagcaagagattacgcgcagaccaaaacgatctcaagaagatcatcttatt
aaggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatgagatta
tcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaatctaa
agtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcacctatc
tcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtagataact
acgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacccacgc
tcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgcagaagt
ggtcctgcaactttatccgcctccatccagtctattccatggtgccacctgacgtctaag
aaaccattattatcatgacattaacctataaaaataggcgtatcacgaggcagaatttca
gataaaaaaaatccttagctttcgctaaggatgatttctggaattcgcggccgcttctag
ag

Data Source:

Alignment settings:

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