abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGLVQPGGSLRLSCAASGFTFS	1 - 30	30
CDR-H1	NYAMS	31 - 35	5
HFR2	WVRQAPGKGPEGVS	36 - 49	14
CDR-H2	GIVSGGVTTWYADSVKG	50 - 66	17
HFR3	RFTISRDNAENMLYLQMNNLKPEDTAVYYCAP	67 - 98	32
CDR-H3	ASGHLRGVRGLGTQVTVSS	99 - 117	19
HFR4		-	-
			117

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	AbM	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	Kabat	QVQLQESGGGLVQPGGSLRLSCAASGFTFS	1 - 30	30
	Contact	QVQLQESGGGLVQPGGSLRLSCAASGFTF-	1 - 29	29
	IMGT	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
CDR-H1	Chothia	GFTFSNY---	26 - 32	7
	AbM	GFTFSNYAMS	26 - 35	10
	Kabat	-----NYAMS	31 - 35	5
	Contact	----SNYAMS	30 - 35	6
	IMGT	GFTFSNYA--	26 - 33	8
HFR2	Chothia	AMSWVRQAPGKGPEGVSGI	33 - 51	19
	AbM	---WVRQAPGKGPEGVS--	36 - 49	14
	Kabat	---WVRQAPGKGPEGVS--	36 - 49	14
	Contact	---WVRQAPGKGPE-----	36 - 46	11
	IMGT	-MSWVRQAPGKGPEGVSG-	34 - 50	17
CDR-H2	Chothia	-----VSGGVT---------	52 - 57	6
	AbM	---GIVSGGVTTW-------	50 - 59	10
	Kabat	---GIVSGGVTTWYADSVKG	50 - 66	17
	Contact	GVSGIVSGGVTTW-------	47 - 59	13
	IMGT	----IVSGGVTT--------	51 - 58	8
HFR3	Chothia	TWYADSVKGRFTISRDNAENMLYLQMNNLKPEDTAVYYCAP	58 - 98	41
	AbM	--YADSVKGRFTISRDNAENMLYLQMNNLKPEDTAVYYCAP	60 - 98	39
	Kabat	---------RFTISRDNAENMLYLQMNNLKPEDTAVYYCAP	67 - 98	32
	Contact	--YADSVKGRFTISRDNAENMLYLQMNNLKPEDTAVYYC--	60 - 96	37
	IMGT	-WYADSVKGRFTISRDNAENMLYLQMNNLKPEDTAVYYC--	59 - 96	38
CDR-H3	Chothia	--ASGHLRGVRGLGTQVTVSS	99 - 117	19
	AbM	--ASGHLRGVRGLGTQVTVSS	99 - 117	19
	Kabat	--ASGHLRGVRGLGTQVTVSS	99 - 117	19
	Contact	APASGHLRGVRGLGTQVTVSS	97 - 117	21
	IMGT	APASGHLRGVRGLGTQVTVSS	97 - 117	21
HFR4	Chothia		-	-
	AbM		-	-
	Kabat		-	-
	Contact		-	-
	IMGT		-	-

Accession & Annotations

Accession	AXC07810.1
Source	abYsis-EMBL-IG MH492421 Submitted 24-JUL-2018 Updated 24-JUL-2018
Name	N2-8_antiAkt1PHMUT-R2AKM29
Organism	Cloning vector pdsg371
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	Glass D.S., Riedel-Kruse I.H. 'A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns' Cell 0:0-0(2018). Glass D.S. Submitted (14-JUN-2018) to the INSDC. Bioengineering, Stanford University, 318 Campus Drive, Clark Center E350, Stanford, CA 94305, USA

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYAMSWVRQAPGKGPEGVSGIVSGGVTTWY
ADSVKGRFTISRDNAENMLYLQMNNLKPEDTAVYYCAPASGHLRGVRGLGTQVTVSS

DNA Sequence:

tggtgcaaaacctttgcggtatggcatgatagcgcctactagagaaagaggagaaatact
agatgtccagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgagg
tcggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagccta
cattgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgt
tagataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttac
gtaataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtac
atttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagcctttt
tatgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcatt
ttactttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaa
cacctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcacc
aaggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaac
aacttaaatgtgaaagtgggtcctaataatactagagccaggcatcaaataaaacgaaag
gctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctac
tagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagtcccta
tcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagaaag
aggagaaatactagatgattactcatggttgttatacccggacccggcacaagcataagc
taaaaaaaacattgattatgcttagtgctggtttaggattgtttttttatgttaatcaga
actcatttgcaaatggtgaaaattattttaaattgggttcggattcaaaactgttaactc
atgatagctatcagaatcgccttttttatacgttgaaaactggtgaaactgttgccgatc
tttctaaatcgcaagatattaatttatcgacgatttggtcgttgaataagcatttataca
gttctgaaagcgaaatgatgaaggccgcgcctggtcagcagatcattttgccactcaaaa
aacttccctttgaatacagtgcactaccacttttaggttcggcacctcttgttgctgcgg
gtggtgttgctggtcacacgaataaactgactaaaatgtccccggacgtgaccaaaagca
acatgaccgatgacaaggcattaaattatgcggcacaacaggcggcgagtctcggtagcc
agcttcagtcgcgatctctgaacggcgattacgcgaaagataccgctcttggtatcgctg
gtaaccaggcttcgtcacagttgcaggcctggttacaacattatggaacggcagaggtta
atctgcaaagtggtaataactttgacggtagttcactggacttcttattaccgttctatg
attccgaaaaaatgctggcatttggtcaggtcggagcgcgttacattgactcccgcttta
cggcaaatttaggtgcgggtcagcgttttttccttcctgcaaacatgttgggctataacg
tcttcattgatcaggatttttctggtgataatacccgtttaggtattggtggcgaatact
ggcgagactatttcaaaagtagcgttaacggctatttccgcatgagcggctggcatgagt
catacaataagaaagactatgatgagcgcccagcaaatggcttcgatatccgttttaatg
gctatctaccgtcatatccggcattaggcgccaagctgatatatgagcagtattatggtg
ataatgttgctttgtttaattctgataagctgcaatcgaatcctggtgcggcgaccgttg
gtgtaaactatactccgattcctctggtgacgatggggatcgattaccgtcatggtacgg
gtaatgaaaatgatctcctttactcaatgcagttccgttatcagtttgataaatcgtggt
ctcagcaaattgaaccacagtatgttaacgagttaagaacattatcaggcagccgttacg
atctggttcagcgtaataacaatattattctggagtacaagaagcaggatattctttctc
tgaatattccgcatgatattaatggtactgaacacagtacgcagaagattcagttgatcg
ttaagagcaaatacggtctggatcgtatcgtctgggatgatagtgcattacgcagtcagg
gcggtcagattcagcatagcggaagccaaagcgcacaagactaccaggctattttgcctg
cttatgtgcaaggtggcagcaatatttataaagtgacggctcgcgcctatgaccgtaatg
gcaatagctctaacaatgtacagcttactattaccgttctgtcgaatggtcaagttgtcg
accaggttggggtaacggactttacggcggataagacttcggctaaagcggataacgccg
ataccattacttataccgcgacggtgaaaaagaatggggtagctcaggctaatgtccctg
tttcatttaatattgtttcaggaactgcaactcttggggcaaatagtgccaaaacggatg
ctaacggtaaggcaaccgtaacgttgaagtcgagtacgccaggacaggtcgtcgtgtctg
ctaaaaccgcggagatgacttcagcacttaatgccagtgcggttatattttttgatggtg
cgactagacaggtacagttacaggaatccgggggaggattggtccaaccgggtggaagtt
tgcgtttgtcatgcgcggcatcgggatttactttcagcaattatgcaatgagctgggttc
gtcaagcgccagggaagggtcccgagggggtttctggcattgtcagcgggggagtcacaa
cttggtatgcggatagcgtcaaaggccgcttcaccatttcacgtgataatgctgaaaaca
tgctttaccttcaaatgaataaccttaaaccagaagatacggctgtatattactgcgctc
ctgcctctggacatttacgtggagttcgtggtcttggcacgcaggtaactgtctcatcat
aataatactagtagcggccgctgcagtccggcaaaaaagggcaaggtgtcaccaccctgc
cctttttctttaaaaccgaaaagattacttcgcgttatgcaggcttcctcgctcactgac
tcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatc
tcgagtcccgtcaagtcagcgtaatgctctgccagtgttacaaccaattaaccaattctg
attagaaaaactcatcgagcatcaaatgaaactgcaatttattcatatcaggattatcaa
taccatatttttgaaaaagccgtttctgtaatgaaggagaaaactcaccgaggcagttcc
ataggatggcaagatcctggtatcggtctgcgattccgactcgtccaacatcaatacaac
ctattaatttcccctcgtcaaaaataaggttatcaagtgagaaatcaccatgagtgacga
ctgaatccggtgagaatggcaaaagcttatgcatttctttccagacttgttcaacaggcc
agccattacgctcgtcatcaaaatcactcgcatcaaccaaaccgttattcattcgtgatt
gcgcctgagcgagacgaaatacgcgatcgctgttaaaaggacaattacaaacaggaatcg
aatgcaaccggcgcaggaacactgccagcgcatcaacaatattttcacctgaatcaggat
attcttctaatacctggaatgctgttttcccggggatcgcagtggtgagtaaccatgcat
catcaggagtacggataaaatgcttgatggtcggaagaggcataaattccgtcagccagt
ttagtctgaccatctcatctgtaacatcattggcaacgctacctttgccatgtttcagaa
acaactctggcgcatcgggcttcccatacaatcgatagattgtcgcacctgattgcccga
cattatcgcgagcccatttatacccatataaatcagcatccatgttggaatttaatcgcg
gcctcgagcaagacgtttcccgttgaatatggctcataacaccccttgtattactgttta
tgtaagcagacagttttattgttcatgatgatatatttttatcttgtgcaatgtaacatc
agagattttgagacacaacgtggctttgttgaataaatcgaacttttgctgagttgaagg
atcagatcacgcatcttcccgacaacgcagaccgttccgtggcaaagcaaaagttcaaaa
tcaccaactggtccacctacaacaaagctctcatcaaccgtggctccctcactttctggc
tggatgatggggcgattcaggcctggtatgagtcagcaacaccttcttcacgaggcagac
ctcagcgctagcggagtgtatactggcttactatgttggcactgatgagggtgtcagtga
agtgcttcatgtggcaggagaaaaaaggctgcaccggtgcgtcagcagaatatgtgatac
aggatatattccgcttcctcgctcactgactcgctacgctcggtcgttcgactgcggcga
gcggaaatggcttacgaacggggcggagatttcctggaagatgccaggaagatacttaac
agggaagtgagagggccgcggcaaagccgtttttccataggctccgcccccctgacaagc
atcacgaaatctgacgctcaaatcagtggtggcgaaacccgacaggactataaagatacc
aggcgtttcccctggcggctccctcgtgcgctctcctgttcctgcctttcggtttaccgg
tgtcattccgctgttatggccgcgtttgtctcattccacgcctgacactcagttccgggt
aggcagttcgctccaagctggactgtatgcacgaaccccccgttcagtccgaccgctgcg
ccttatccggtaactatcgtcttgagtccaacccggaaagacatgcaaaagcaccactgg
cagcagccactggtaattgatttagaggagttagtcttgaagtcatgcgccggttaaggc
taaactgaaaggacaagttttggtgactgcgctcctccaagccagttacctcggttcaaa
gagttggtagctcagagaaccttcgaaaaaccgccctgcaaggcggttttttcgttttca
gagcaagagattacgcgcagaccaaaacgatctcaagaagatcatcttattaaggggtct
gacgctcagtggaacgaaaactcacgttaagggattttggtcatgagattatcaaaaagg
atcttcacctagatccttttaaattaaaaatgaagttttaaatcaatctaaagtatatat
gagtaaacttggtctgacagttaccaatgcttaatcagtgaggcacctatctcagcgatc
tgtctatttcgttcatccatagttgcctgactccccgtcgtgtagataactacgatacgg
gagggcttaccatctggccccagtgctgcaatgataccgcgagacccacgctcaccggct
ccagatttatcagcaataaaccagccagccggaagggccgagcgcagaagtggtcctgca
actttatccgcctccatccagtctattccatggtgccacctgacgtctaagaaaccatta
ttatcatgacattaacctataaaaataggcgtatcacgaggcagaatttcagataaaaaa
aatccttagctttcgctaaggatgatttctggaattcgcggccgcttctagag

Data Source:

Alignment settings:

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