abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGSVQAGGSLRLSCVVSGYTYS	1 - 30	30
CDR-H1	SKCMS	31 - 35	5
HFR2	WYRQAPGKQREFVS	36 - 49	14
CDR-H2	YIDSDGSTKYADSVTG	50 - 65	16
HFR3	RFTISQDNAKNTVYLQMNSLKPEDTAMYYCKM	66 - 97	32
CDR-H3	RTVSCRGGVFDQVDNY	98 - 113	16
HFR4	WGQGTQVTVSS	114 - 124	11
			124

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGSVQAGGSLRLSCVVS-----	1 - 25	25
	AbM	QVQLQESGGGSVQAGGSLRLSCVVS-----	1 - 25	25
	Kabat	QVQLQESGGGSVQAGGSLRLSCVVSGYTYS	1 - 30	30
	Contact	QVQLQESGGGSVQAGGSLRLSCVVSGYTY-	1 - 29	29
	IMGT	QVQLQESGGGSVQAGGSLRLSCVVS-----	1 - 25	25
CDR-H1	Chothia	GYTYSSK---	26 - 32	7
	AbM	GYTYSSKCMS	26 - 35	10
	Kabat	-----SKCMS	31 - 35	5
	Contact	----SSKCMS	30 - 35	6
	IMGT	GYTYSSKC--	26 - 33	8
HFR2	Chothia	CMSWYRQAPGKQREFVSYI	33 - 51	19
	AbM	---WYRQAPGKQREFVS--	36 - 49	14
	Kabat	---WYRQAPGKQREFVS--	36 - 49	14
	Contact	---WYRQAPGKQRE-----	36 - 46	11
	IMGT	-MSWYRQAPGKQREFVSY-	34 - 50	17
CDR-H2	Chothia	-----DSDGS---------	52 - 56	5
	AbM	---YIDSDGSTK-------	50 - 58	9
	Kabat	---YIDSDGSTKYADSVTG	50 - 65	16
	Contact	FVSYIDSDGSTK-------	47 - 58	12
	IMGT	----IDSDGST--------	51 - 57	7
HFR3	Chothia	TKYADSVTGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCKM	57 - 97	41
	AbM	--YADSVTGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCKM	59 - 97	39
	Kabat	---------RFTISQDNAKNTVYLQMNSLKPEDTAMYYCKM	66 - 97	32
	Contact	--YADSVTGRFTISQDNAKNTVYLQMNSLKPEDTAMYYC--	59 - 95	37
	IMGT	-KYADSVTGRFTISQDNAKNTVYLQMNSLKPEDTAMYYC--	58 - 95	38
CDR-H3	Chothia	--RTVSCRGGVFDQVDNY	98 - 113	16
	AbM	--RTVSCRGGVFDQVDNY	98 - 113	16
	Kabat	--RTVSCRGGVFDQVDNY	98 - 113	16
	Contact	KMRTVSCRGGVFDQVDN-	96 - 112	17
	IMGT	KMRTVSCRGGVFDQVDNY	96 - 113	18
HFR4	Chothia	-WGQGTQVTVSS	114 - 124	11
	AbM	-WGQGTQVTVSS	114 - 124	11
	Kabat	-WGQGTQVTVSS	114 - 124	11
	Contact	YWGQGTQVTVSS	113 - 124	12
	IMGT	-WGQGTQVTVSS	114 - 124	11

Accession & Annotations

Accession	AXC07826.1
Source	abYsis-EMBL-IG MH492425 Submitted 24-JUL-2018 Updated 24-JUL-2018
Name	N5-1_antigelsolinFAF-FAF1
Organism	Cloning vector pdsg376
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	Glass D.S., Riedel-Kruse I.H. 'A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns' Cell 0:0-0(2018). Glass D.S. Submitted (14-JUN-2018) to the INSDC. Bioengineering, Stanford University, 318 Campus Drive, Clark Center E350, Stanford, CA 94305, USA

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGSVQAGGSLRLSCVVSGYTYSSKCMSWYRQAPGKQREFVSYIDSDGSTKYA
DSVTGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCKMRTVSCRGGVFDQVDNYWGQGTQV
TVSS

DNA Sequence:

tggtgcaaaacctttgcggtatggcatgatagcgcctactagagaaagaggagaaatact
agatgtccagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgagg
tcggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagccta
cattgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgt
tagataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttac
gtaataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtac
atttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagcctttt
tatgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcatt
ttactttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaa
cacctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcacc
aaggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaac
aacttaaatgtgaaagtgggtcctaataatactagagccaggcatcaaataaaacgaaag
gctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctac
tagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagtcccta
tcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagaaag
aggagaaatactagatgattactcatggttgttatacccggacccggcacaagcataagc
taaaaaaaacattgattatgcttagtgctggtttaggattgtttttttatgttaatcaga
actcatttgcaaatggtgaaaattattttaaattgggttcggattcaaaactgttaactc
atgatagctatcagaatcgccttttttatacgttgaaaactggtgaaactgttgccgatc
tttctaaatcgcaagatattaatttatcgacgatttggtcgttgaataagcatttataca
gttctgaaagcgaaatgatgaaggccgcgcctggtcagcagatcattttgccactcaaaa
aacttccctttgaatacagtgcactaccacttttaggttcggcacctcttgttgctgcgg
gtggtgttgctggtcacacgaataaactgactaaaatgtccccggacgtgaccaaaagca
acatgaccgatgacaaggcattaaattatgcggcacaacaggcggcgagtctcggtagcc
agcttcagtcgcgatctctgaacggcgattacgcgaaagataccgctcttggtatcgctg
gtaaccaggcttcgtcacagttgcaggcctggttacaacattatggaacggcagaggtta
atctgcaaagtggtaataactttgacggtagttcactggacttcttattaccgttctatg
attccgaaaaaatgctggcatttggtcaggtcggagcgcgttacattgactcccgcttta
cggcaaatttaggtgcgggtcagcgttttttccttcctgcaaacatgttgggctataacg
tcttcattgatcaggatttttctggtgataatacccgtttaggtattggtggcgaatact
ggcgagactatttcaaaagtagcgttaacggctatttccgcatgagcggctggcatgagt
catacaataagaaagactatgatgagcgcccagcaaatggcttcgatatccgttttaatg
gctatctaccgtcatatccggcattaggcgccaagctgatatatgagcagtattatggtg
ataatgttgctttgtttaattctgataagctgcaatcgaatcctggtgcggcgaccgttg
gtgtaaactatactccgattcctctggtgacgatggggatcgattaccgtcatggtacgg
gtaatgaaaatgatctcctttactcaatgcagttccgttatcagtttgataaatcgtggt
ctcagcaaattgaaccacagtatgttaacgagttaagaacattatcaggcagccgttacg
atctggttcagcgtaataacaatattattctggagtacaagaagcaggatattctttctc
tgaatattccgcatgatattaatggtactgaacacagtacgcagaagattcagttgatcg
ttaagagcaaatacggtctggatcgtatcgtctgggatgatagtgcattacgcagtcagg
gcggtcagattcagcatagcggaagccaaagcgcacaagactaccaggctattttgcctg
cttatgtgcaaggtggcagcaatatttataaagtgacggctcgcgcctatgaccgtaatg
gcaatagctctaacaatgtacagcttactattaccgttctgtcgaatggtcaagttgtcg
accaggttggggtaacggactttacggcggataagacttcggctaaagcggataacgccg
ataccattacttataccgcgacggtgaaaaagaatggggtagctcaggctaatgtccctg
tttcatttaatattgtttcaggaactgcaactcttggggcaaatagtgccaaaacggatg
ctaacggtaaggcaaccgtaacgttgaagtcgagtacgccaggacaggtcgtcgtgtctg
ctaaaaccgcggagatgacttcagcacttaatgccagtgcggttatattttttgatggtg
cgactagacaggtgcagttacaggagagtggcggcggatctgtccaggcaggtggctccc
ttcgtctgagttgtgtagtatccggctatacatatagtagcaagtgtatgagttggtatc
gtcaggcgcctgggaagcaacgcgagtttgtatcctacattgacagcgatggatcaacca
agtatgcggacagtgtaactggacgcttcaccatttcccaagataatgcaaagaatacag
tgtatttacaaatgaacagtctgaaaccagaggataccgccatgtattattgcaagatgc
gcaccgtttcttgccgtggcggagtgtttgaccaagtagacaattattggggccagggaa
cgcaggtgacggtttcttcctaataatactagtagcggccgctgcagtccggcaaaaaag
ggcaaggtgtcaccaccctgccctttttctttaaaaccgaaaagattacttcgcgttatg
caggcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatca
gctcactcaaaggcggtaatctcgagtcccgtcaagtcagcgtaatgctctgccagtgtt
acaaccaattaaccaattctgattagaaaaactcatcgagcatcaaatgaaactgcaatt
tattcatatcaggattatcaataccatatttttgaaaaagccgtttctgtaatgaaggag
aaaactcaccgaggcagttccataggatggcaagatcctggtatcggtctgcgattccga
ctcgtccaacatcaatacaacctattaatttcccctcgtcaaaaataaggttatcaagtg
agaaatcaccatgagtgacgactgaatccggtgagaatggcaaaagcttatgcatttctt
tccagacttgttcaacaggccagccattacgctcgtcatcaaaatcactcgcatcaacca
aaccgttattcattcgtgattgcgcctgagcgagacgaaatacgcgatcgctgttaaaag
gacaattacaaacaggaatcgaatgcaaccggcgcaggaacactgccagcgcatcaacaa
tattttcacctgaatcaggatattcttctaatacctggaatgctgttttcccggggatcg
cagtggtgagtaaccatgcatcatcaggagtacggataaaatgcttgatggtcggaagag
gcataaattccgtcagccagtttagtctgaccatctcatctgtaacatcattggcaacgc
tacctttgccatgtttcagaaacaactctggcgcatcgggcttcccatacaatcgataga
ttgtcgcacctgattgcccgacattatcgcgagcccatttatacccatataaatcagcat
ccatgttggaatttaatcgcggcctcgagcaagacgtttcccgttgaatatggctcataa
caccccttgtattactgtttatgtaagcagacagttttattgttcatgatgatatatttt
tatcttgtgcaatgtaacatcagagattttgagacacaacgtggctttgttgaataaatc
gaacttttgctgagttgaaggatcagatcacgcatcttcccgacaacgcagaccgttccg
tggcaaagcaaaagttcaaaatcaccaactggtccacctacaacaaagctctcatcaacc
gtggctccctcactttctggctggatgatggggcgattcaggcctggtatgagtcagcaa
caccttcttcacgaggcagacctcagcgctagcggagtgtatactggcttactatgttgg
cactgatgagggtgtcagtgaagtgcttcatgtggcaggagaaaaaaggctgcaccggtg
cgtcagcagaatatgtgatacaggatatattccgcttcctcgctcactgactcgctacgc
tcggtcgttcgactgcggcgagcggaaatggcttacgaacggggcggagatttcctggaa
gatgccaggaagatacttaacagggaagtgagagggccgcggcaaagccgtttttccata
ggctccgcccccctgacaagcatcacgaaatctgacgctcaaatcagtggtggcgaaacc
cgacaggactataaagataccaggcgtttcccctggcggctccctcgtgcgctctcctgt
tcctgcctttcggtttaccggtgtcattccgctgttatggccgcgtttgtctcattccac
gcctgacactcagttccgggtaggcagttcgctccaagctggactgtatgcacgaacccc
ccgttcagtccgaccgctgcgccttatccggtaactatcgtcttgagtccaacccggaaa
gacatgcaaaagcaccactggcagcagccactggtaattgatttagaggagttagtcttg
aagtcatgcgccggttaaggctaaactgaaaggacaagttttggtgactgcgctcctcca
agccagttacctcggttcaaagagttggtagctcagagaaccttcgaaaaaccgccctgc
aaggcggttttttcgttttcagagcaagagattacgcgcagaccaaaacgatctcaagaa
gatcatcttattaaggggtctgacgctcagtggaacgaaaactcacgttaagggattttg
gtcatgagattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagtttt
aaatcaatctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagt
gaggcacctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtc
gtgtagataactacgatacgggagggcttaccatctggccccagtgctgcaatgataccg
cgagacccacgctcaccggctccagatttatcagcaataaaccagccagccggaagggcc
gagcgcagaagtggtcctgcaactttatccgcctccatccagtctattccatggtgccac
ctgacgtctaagaaaccattattatcatgacattaacctataaaaataggcgtatcacga
ggcagaatttcagataaaaaaaatccttagctttcgctaaggatgatttctggaattcgc
ggccgcttctagag

Data Source:

Alignment settings:

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