abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGLVQTGGSLRLSCTASTSSLN	1 - 30	30
CDR-H1	TYAKG	31 - 35	5
HFR2	WFRQAPGKEREFVA	36 - 49	14
CDR-H2	VISWTGGDEKYADYTEG	50 - 66	17
HFR3	RFTISRDNAKNTVDLQMNSLQPEDTAVYFCAA	67 - 98	32
CDR-H3	GTQFSTFPTMGPHRDY	99 - 114	16
HFR4	WGQGTQVTVSS	115 - 125	11
			125

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQTGGSLRLSCTAS-----	1 - 25	25
	AbM	QVQLQESGGGLVQTGGSLRLSCTAS-----	1 - 25	25
	Kabat	QVQLQESGGGLVQTGGSLRLSCTASTSSLN	1 - 30	30
	Contact	QVQLQESGGGLVQTGGSLRLSCTASTSSL-	1 - 29	29
	IMGT	QVQLQESGGGLVQTGGSLRLSCTAS-----	1 - 25	25
CDR-H1	Chothia	TSSLNTY---	26 - 32	7
	AbM	TSSLNTYAKG	26 - 35	10
	Kabat	-----TYAKG	31 - 35	5
	Contact	----NTYAKG	30 - 35	6
	IMGT	TSSLNTYA--	26 - 33	8
HFR2	Chothia	AKGWFRQAPGKEREFVAVI	33 - 51	19
	AbM	---WFRQAPGKEREFVA--	36 - 49	14
	Kabat	---WFRQAPGKEREFVA--	36 - 49	14
	Contact	---WFRQAPGKERE-----	36 - 46	11
	IMGT	-KGWFRQAPGKEREFVAV-	34 - 50	17
CDR-H2	Chothia	-----SWTGGD---------	52 - 57	6
	AbM	---VISWTGGDEK-------	50 - 59	10
	Kabat	---VISWTGGDEKYADYTEG	50 - 66	17
	Contact	FVAVISWTGGDEK-------	47 - 59	13
	IMGT	----ISWTGGDE--------	51 - 58	8
HFR3	Chothia	EKYADYTEGRFTISRDNAKNTVDLQMNSLQPEDTAVYFCAA	58 - 98	41
	AbM	--YADYTEGRFTISRDNAKNTVDLQMNSLQPEDTAVYFCAA	60 - 98	39
	Kabat	---------RFTISRDNAKNTVDLQMNSLQPEDTAVYFCAA	67 - 98	32
	Contact	--YADYTEGRFTISRDNAKNTVDLQMNSLQPEDTAVYFC--	60 - 96	37
	IMGT	-KYADYTEGRFTISRDNAKNTVDLQMNSLQPEDTAVYFC--	59 - 96	38
CDR-H3	Chothia	--GTQFSTFPTMGPHRDY	99 - 114	16
	AbM	--GTQFSTFPTMGPHRDY	99 - 114	16
	Kabat	--GTQFSTFPTMGPHRDY	99 - 114	16
	Contact	AAGTQFSTFPTMGPHRD-	97 - 113	17
	IMGT	AAGTQFSTFPTMGPHRDY	97 - 114	18
HFR4	Chothia	-WGQGTQVTVSS	115 - 125	11
	AbM	-WGQGTQVTVSS	115 - 125	11
	Kabat	-WGQGTQVTVSS	115 - 125	11
	Contact	YWGQGTQVTVSS	114 - 125	12
	IMGT	-WGQGTQVTVSS	115 - 125	11

Accession & Annotations

Accession	AXC07922.1
Source	abYsis-EMBL-IG MH492449 Submitted 24-JUL-2018 Updated 24-JUL-2018
Name	N7-11_antiP53NLSRegHis6-R3PNR82
Organism	Cloning vector pdsg390
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	Glass D.S., Riedel-Kruse I.H. 'A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns' Cell 0:0-0(2018). Glass D.S. Submitted (14-JUN-2018) to the INSDC. Bioengineering, Stanford University, 318 Campus Drive, Clark Center E350, Stanford, CA 94305, USA

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGLVQTGGSLRLSCTASTSSLNTYAKGWFRQAPGKEREFVAVISWTGGDEKY
ADYTEGRFTISRDNAKNTVDLQMNSLQPEDTAVYFCAAGTQFSTFPTMGPHRDYWGQGTQ
VTVSS

DNA Sequence:

tggtgcaaaacctttgcggtatggcatgatagcgcctactagagaaagaggagaaatact
agatgtccagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgagg
tcggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagccta
cattgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgt
tagataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttac
gtaataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtac
atttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagcctttt
tatgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcatt
ttactttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaa
cacctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcacc
aaggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaac
aacttaaatgtgaaagtgggtcctaataatactagagccaggcatcaaataaaacgaaag
gctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctac
tagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagtcccta
tcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagaaag
aggagaaatactagatgattactcatggttgttatacccggacccggcacaagcataagc
taaaaaaaacattgattatgcttagtgctggtttaggattgtttttttatgttaatcaga
actcatttgcaaatggtgaaaattattttaaattgggttcggattcaaaactgttaactc
atgatagctatcagaatcgccttttttatacgttgaaaactggtgaaactgttgccgatc
tttctaaatcgcaagatattaatttatcgacgatttggtcgttgaataagcatttataca
gttctgaaagcgaaatgatgaaggccgcgcctggtcagcagatcattttgccactcaaaa
aacttccctttgaatacagtgcactaccacttttaggttcggcacctcttgttgctgcgg
gtggtgttgctggtcacacgaataaactgactaaaatgtccccggacgtgaccaaaagca
acatgaccgatgacaaggcattaaattatgcggcacaacaggcggcgagtctcggtagcc
agcttcagtcgcgatctctgaacggcgattacgcgaaagataccgctcttggtatcgctg
gtaaccaggcttcgtcacagttgcaggcctggttacaacattatggaacggcagaggtta
atctgcaaagtggtaataactttgacggtagttcactggacttcttattaccgttctatg
attccgaaaaaatgctggcatttggtcaggtcggagcgcgttacattgactcccgcttta
cggcaaatttaggtgcgggtcagcgttttttccttcctgcaaacatgttgggctataacg
tcttcattgatcaggatttttctggtgataatacccgtttaggtattggtggcgaatact
ggcgagactatttcaaaagtagcgttaacggctatttccgcatgagcggctggcatgagt
catacaataagaaagactatgatgagcgcccagcaaatggcttcgatatccgttttaatg
gctatctaccgtcatatccggcattaggcgccaagctgatatatgagcagtattatggtg
ataatgttgctttgtttaattctgataagctgcaatcgaatcctggtgcggcgaccgttg
gtgtaaactatactccgattcctctggtgacgatggggatcgattaccgtcatggtacgg
gtaatgaaaatgatctcctttactcaatgcagttccgttatcagtttgataaatcgtggt
ctcagcaaattgaaccacagtatgttaacgagttaagaacattatcaggcagccgttacg
atctggttcagcgtaataacaatattattctggagtacaagaagcaggatattctttctc
tgaatattccgcatgatattaatggtactgaacacagtacgcagaagattcagttgatcg
ttaagagcaaatacggtctggatcgtatcgtctgggatgatagtgcattacgcagtcagg
gcggtcagattcagcatagcggaagccaaagcgcacaagactaccaggctattttgcctg
cttatgtgcaaggtggcagcaatatttataaagtgacggctcgcgcctatgaccgtaatg
gcaatagctctaacaatgtacagcttactattaccgttctgtcgaatggtcaagttgtcg
accaggttggggtaacggactttacggcggataagacttcggctaaagcggataacgccg
ataccattacttataccgcgacggtgaaaaagaatggggtagctcaggctaatgtccctg
tttcatttaatattgtttcaggaactgcaactcttggggcaaatagtgccaaaacggatg
ctaacggtaaggcaaccgtaacgttgaagtcgagtacgccaggacaggtcgtcgtgtctg
ctaaaaccgcggagatgacttcagcacttaatgccagtgcggttatattttttgatggtg
cgactagacaagtccaattacaggaaagtggtggaggcttagttcagacgggtgggtctc
tgcgtctgtcatgcacggcttcgacctcttcgcttaacacatacgccaaaggatggttcc
gtcaggccccggggaaggagcgtgagttcgtagccgttattagttggaccggtggagatg
aaaaatatgccgattatactgaagggcgctttacaatctcccgtgacaacgcgaagaata
cggtggatttacaaatgaactccttacaaccggaggacacggctgtatatttctgtgccg
ctgggacccaattcagcacgtttcctacaatggggccacaccgtgattactggggacagg
gcactcaagtgacagtgtccagttaataatactagtagcggccgctgcagtccggcaaaa
aagggcaaggtgtcaccaccctgccctttttctttaaaaccgaaaagattacttcgcgtt
atgcaggcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggta
tcagctcactcaaaggcggtaatctcgagtcccgtcaagtcagcgtaatgctctgccagt
gttacaaccaattaaccaattctgattagaaaaactcatcgagcatcaaatgaaactgca
atttattcatatcaggattatcaataccatatttttgaaaaagccgtttctgtaatgaag
gagaaaactcaccgaggcagttccataggatggcaagatcctggtatcggtctgcgattc
cgactcgtccaacatcaatacaacctattaatttcccctcgtcaaaaataaggttatcaa
gtgagaaatcaccatgagtgacgactgaatccggtgagaatggcaaaagcttatgcattt
ctttccagacttgttcaacaggccagccattacgctcgtcatcaaaatcactcgcatcaa
ccaaaccgttattcattcgtgattgcgcctgagcgagacgaaatacgcgatcgctgttaa
aaggacaattacaaacaggaatcgaatgcaaccggcgcaggaacactgccagcgcatcaa
caatattttcacctgaatcaggatattcttctaatacctggaatgctgttttcccgggga
tcgcagtggtgagtaaccatgcatcatcaggagtacggataaaatgcttgatggtcggaa
gaggcataaattccgtcagccagtttagtctgaccatctcatctgtaacatcattggcaa
cgctacctttgccatgtttcagaaacaactctggcgcatcgggcttcccatacaatcgat
agattgtcgcacctgattgcccgacattatcgcgagcccatttatacccatataaatcag
catccatgttggaatttaatcgcggcctcgagcaagacgtttcccgttgaatatggctca
taacaccccttgtattactgtttatgtaagcagacagttttattgttcatgatgatatat
ttttatcttgtgcaatgtaacatcagagattttgagacacaacgtggctttgttgaataa
atcgaacttttgctgagttgaaggatcagatcacgcatcttcccgacaacgcagaccgtt
ccgtggcaaagcaaaagttcaaaatcaccaactggtccacctacaacaaagctctcatca
accgtggctccctcactttctggctggatgatggggcgattcaggcctggtatgagtcag
caacaccttcttcacgaggcagacctcagcgctagcggagtgtatactggcttactatgt
tggcactgatgagggtgtcagtgaagtgcttcatgtggcaggagaaaaaaggctgcaccg
gtgcgtcagcagaatatgtgatacaggatatattccgcttcctcgctcactgactcgcta
cgctcggtcgttcgactgcggcgagcggaaatggcttacgaacggggcggagatttcctg
gaagatgccaggaagatacttaacagggaagtgagagggccgcggcaaagccgtttttcc
ataggctccgcccccctgacaagcatcacgaaatctgacgctcaaatcagtggtggcgaa
acccgacaggactataaagataccaggcgtttcccctggcggctccctcgtgcgctctcc
tgttcctgcctttcggtttaccggtgtcattccgctgttatggccgcgtttgtctcattc
cacgcctgacactcagttccgggtaggcagttcgctccaagctggactgtatgcacgaac
cccccgttcagtccgaccgctgcgccttatccggtaactatcgtcttgagtccaacccgg
aaagacatgcaaaagcaccactggcagcagccactggtaattgatttagaggagttagtc
ttgaagtcatgcgccggttaaggctaaactgaaaggacaagttttggtgactgcgctcct
ccaagccagttacctcggttcaaagagttggtagctcagagaaccttcgaaaaaccgccc
tgcaaggcggttttttcgttttcagagcaagagattacgcgcagaccaaaacgatctcaa
gaagatcatcttattaaggggtctgacgctcagtggaacgaaaactcacgttaagggatt
ttggtcatgagattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagt
tttaaatcaatctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatc
agtgaggcacctatctcagcgatctgtctatttcgttcatccatagttgcctgactcccc
gtcgtgtagataactacgatacgggagggcttaccatctggccccagtgctgcaatgata
ccgcgagacccacgctcaccggctccagatttatcagcaataaaccagccagccggaagg
gccgagcgcagaagtggtcctgcaactttatccgcctccatccagtctattccatggtgc
cacctgacgtctaagaaaccattattatcatgacattaacctataaaaataggcgtatca
cgaggcagaatttcagataaaaaaaatccttagctttcgctaaggatgatttctggaatt
cgcggccgcttctagag

Data Source:

Alignment settings:

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