abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGLVQPGGSLRLSCAASGFAFS	1 - 30	30
CDR-H1	GYAMS	31 - 35	5
HFR2	WVRQAPGKGLEWVS	36 - 49	14
CDR-H2	GINRDGSTSYTAPVKG	50 - 65	16
HFR3	RFTISRDNAKNILYLQMNSLRPEDTAVYYCAK	66 - 97	32
CDR-H3	WLGGRDWYD	98 - 106	9
HFR4	RGQGTQVTVS	107 - 116	10
			116

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	AbM	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	Kabat	QVQLQESGGGLVQPGGSLRLSCAASGFAFS	1 - 30	30
	Contact	QVQLQESGGGLVQPGGSLRLSCAASGFAF-	1 - 29	29
	IMGT	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
CDR-H1	Chothia	GFAFSGY---	26 - 32	7
	AbM	GFAFSGYAMS	26 - 35	10
	Kabat	-----GYAMS	31 - 35	5
	Contact	----SGYAMS	30 - 35	6
	IMGT	GFAFSGYA--	26 - 33	8
HFR2	Chothia	AMSWVRQAPGKGLEWVSGI	33 - 51	19
	AbM	---WVRQAPGKGLEWVS--	36 - 49	14
	Kabat	---WVRQAPGKGLEWVS--	36 - 49	14
	Contact	---WVRQAPGKGLE-----	36 - 46	11
	IMGT	-MSWVRQAPGKGLEWVSG-	34 - 50	17
CDR-H2	Chothia	-----NRDGS---------	52 - 56	5
	AbM	---GINRDGSTS-------	50 - 58	9
	Kabat	---GINRDGSTSYTAPVKG	50 - 65	16
	Contact	WVSGINRDGSTS-------	47 - 58	12
	IMGT	----INRDGST--------	51 - 57	7
HFR3	Chothia	TSYTAPVKGRFTISRDNAKNILYLQMNSLRPEDTAVYYCAK	57 - 97	41
	AbM	--YTAPVKGRFTISRDNAKNILYLQMNSLRPEDTAVYYCAK	59 - 97	39
	Kabat	---------RFTISRDNAKNILYLQMNSLRPEDTAVYYCAK	66 - 97	32
	Contact	--YTAPVKGRFTISRDNAKNILYLQMNSLRPEDTAVYYC--	59 - 95	37
	IMGT	-SYTAPVKGRFTISRDNAKNILYLQMNSLRPEDTAVYYC--	58 - 95	38
CDR-H3	Chothia	--WLGGRDWYD	98 - 106	9
	AbM	--WLGGRDWYD	98 - 106	9
	Kabat	--WLGGRDWYD	98 - 106	9
	Contact	AKWLGGRDWY-	96 - 105	10
	IMGT	AKWLGGRDWYD	96 - 106	11
HFR4	Chothia	-RGQGTQVTVS	107 - 116	10
	AbM	-RGQGTQVTVS	107 - 116	10
	Kabat	-RGQGTQVTVS	107 - 116	10
	Contact	DRGQGTQVTVS	106 - 116	11
	IMGT	-RGQGTQVTVS	107 - 116	10

Accession & Annotations

Accession	3cfi_C
Source	PDB 3cfi Submitted 03-MAR-2008 Updated 13-JUL-2011
Name	NANOBODY-AIDED STRUCTURE DETERMINATION OF THE EPSI:EPSJ PSEUDOPILIN HETERDIMER FROM VIBRIO VULNIFICUS
Organism	Lama glama
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	PDB: 3cfi_F 3cfi_I 3cfi_L
References	LAM Y., PARDON E., KOROTKOV V., HOL G., STEYAERT J. 'NANOBODY-AIDED STRUCTURE DETERMINATION OF THE EPSI:EPSJ PSEUDOPILIN HETERODIMER FROM VIBRIO VULNIFICUS.' J.STRUCT.BIOL. V. 166 8 2009 ISSN 1047-8477

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGLVQPGGSLRLSCAASGFAFSGYAMSWVRQAPGKGLEWVSGINRDGSTSYT
APVKGRFTISRDNAKNILYLQMNSLRPEDTAVYYCAKWLGGRDWYDRGQGTQVTVS