abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGSAQTGGSLRLSCAASGFTFS	1 - 30	30
CDR-H1	HGYMA	31 - 35	5
HFR2	WFRQAPEKEREWVA	36 - 49	14
CDR-H2	CVRTSGVSAYYADSVLG	50 - 66	17
HFR3	RFTISQDNAKSTLYLQMNNLKPEDTAMYYCAA	67 - 98	32
CDR-H3	TSISCSSGYMF	99 - 109	11
HFR4	WGQGTQVTVSS	110 - 120	11
Tail	HHHHHH	120 - 126	6
			126

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGSAQTGGSLRLSCAAS-----	1 - 25	25
	AbM	QVQLQESGGGSAQTGGSLRLSCAAS-----	1 - 25	25
	Kabat	QVQLQESGGGSAQTGGSLRLSCAASGFTFS	1 - 30	30
	Contact	QVQLQESGGGSAQTGGSLRLSCAASGFTF-	1 - 29	29
	IMGT	QVQLQESGGGSAQTGGSLRLSCAAS-----	1 - 25	25
CDR-H1	Chothia	GFTFSHG---	26 - 32	7
	AbM	GFTFSHGYMA	26 - 35	10
	Kabat	-----HGYMA	31 - 35	5
	Contact	----SHGYMA	30 - 35	6
	IMGT	GFTFSHGY--	26 - 33	8
HFR2	Chothia	YMAWFRQAPEKEREWVACV	33 - 51	19
	AbM	---WFRQAPEKEREWVA--	36 - 49	14
	Kabat	---WFRQAPEKEREWVA--	36 - 49	14
	Contact	---WFRQAPEKERE-----	36 - 46	11
	IMGT	-MAWFRQAPEKEREWVAC-	34 - 50	17
CDR-H2	Chothia	-----RTSGVS---------	52 - 57	6
	AbM	---CVRTSGVSAY-------	50 - 59	10
	Kabat	---CVRTSGVSAYYADSVLG	50 - 66	17
	Contact	WVACVRTSGVSAY-------	47 - 59	13
	IMGT	----VRTSGVSA--------	51 - 58	8
HFR3	Chothia	AYYADSVLGRFTISQDNAKSTLYLQMNNLKPEDTAMYYCAA	58 - 98	41
	AbM	--YADSVLGRFTISQDNAKSTLYLQMNNLKPEDTAMYYCAA	60 - 98	39
	Kabat	---------RFTISQDNAKSTLYLQMNNLKPEDTAMYYCAA	67 - 98	32
	Contact	--YADSVLGRFTISQDNAKSTLYLQMNNLKPEDTAMYYC--	60 - 96	37
	IMGT	-YYADSVLGRFTISQDNAKSTLYLQMNNLKPEDTAMYYC--	59 - 96	38
CDR-H3	Chothia	--TSISCSSGYMF	99 - 109	11
	AbM	--TSISCSSGYMF	99 - 109	11
	Kabat	--TSISCSSGYMF	99 - 109	11
	Contact	AATSISCSSGYM-	97 - 108	12
	IMGT	AATSISCSSGYMF	97 - 109	13
HFR4	Chothia	-WGQGTQVTVSS	110 - 120	11
	AbM	-WGQGTQVTVSS	110 - 120	11
	Kabat	-WGQGTQVTVSS	110 - 120	11
	Contact	FWGQGTQVTVSS	109 - 120	12
	IMGT	-WGQGTQVTVSS	110 - 120	11

Accession & Annotations

Accession	3jbd_7
Source	PDB 3jbd Submitted 26-AUG-2015 Updated 18-JUL-2018
Name	COMPLEX OF POLIOVIRUS WITH VHH PVSP6A
Organism	Camelus dromedarius
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	STRAUSS M., SCHOTTE L., THYS B., FILMAN J., HOGLE M. 'FIVE OF FIVE VHHS NEUTRALIZING POLIOVIRUS BIND THE RECEPTOR-BINDING SITE.' J.VIROL. V. 90 3496 2016 ISSN 0022-538X

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGSAQTGGSLRLSCAASGFTFSHGYMAWFRQAPEKEREWVACVRTSGVSAYY
ADSVLGRFTISQDNAKSTLYLQMNNLKPEDTAMYYCAATSISCSSGYMFWGQGTQVTVSS
HHHHHH