abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGLVQAGGSLRLSCAASGRTSS	1 - 30	30
CDR-H1	AYAMG	31 - 35	5
HFR2	WFRQAPGKEREFVA	36 - 49	14
CDR-H2	GISSKGGSTYYGASMKG	50 - 66	17
HFR3	RFTISRDNAKNTVYLQMNGLAPEDTAVYYCAA	67 - 98	32
CDR-H3	SDKYNFDTSHAGYGY	99 - 113	15
HFR4	WGQGTQVTVSS	114 - 124	11
Tail	HHHHHH	124 - 130	6
			130

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQAGGSLRLSCAAS-----	1 - 25	25
	AbM	QVQLQESGGGLVQAGGSLRLSCAAS-----	1 - 25	25
	Kabat	QVQLQESGGGLVQAGGSLRLSCAASGRTSS	1 - 30	30
	Contact	QVQLQESGGGLVQAGGSLRLSCAASGRTS-	1 - 29	29
	IMGT	QVQLQESGGGLVQAGGSLRLSCAAS-----	1 - 25	25
CDR-H1	Chothia	GRTSSAY---	26 - 32	7
	AbM	GRTSSAYAMG	26 - 35	10
	Kabat	-----AYAMG	31 - 35	5
	Contact	----SAYAMG	30 - 35	6
	IMGT	GRTSSAYA--	26 - 33	8
HFR2	Chothia	AMGWFRQAPGKEREFVAGI	33 - 51	19
	AbM	---WFRQAPGKEREFVA--	36 - 49	14
	Kabat	---WFRQAPGKEREFVA--	36 - 49	14
	Contact	---WFRQAPGKERE-----	36 - 46	11
	IMGT	-MGWFRQAPGKEREFVAG-	34 - 50	17
CDR-H2	Chothia	-----SSKGGS---------	52 - 57	6
	AbM	---GISSKGGSTY-------	50 - 59	10
	Kabat	---GISSKGGSTYYGASMKG	50 - 66	17
	Contact	FVAGISSKGGSTY-------	47 - 59	13
	IMGT	----ISSKGGST--------	51 - 58	8
HFR3	Chothia	TYYGASMKGRFTISRDNAKNTVYLQMNGLAPEDTAVYYCAA	58 - 98	41
	AbM	--YGASMKGRFTISRDNAKNTVYLQMNGLAPEDTAVYYCAA	60 - 98	39
	Kabat	---------RFTISRDNAKNTVYLQMNGLAPEDTAVYYCAA	67 - 98	32
	Contact	--YGASMKGRFTISRDNAKNTVYLQMNGLAPEDTAVYYC--	60 - 96	37
	IMGT	-YYGASMKGRFTISRDNAKNTVYLQMNGLAPEDTAVYYC--	59 - 96	38
CDR-H3	Chothia	--SDKYNFDTSHAGYGY	99 - 113	15
	AbM	--SDKYNFDTSHAGYGY	99 - 113	15
	Kabat	--SDKYNFDTSHAGYGY	99 - 113	15
	Contact	AASDKYNFDTSHAGYG-	97 - 112	16
	IMGT	AASDKYNFDTSHAGYGY	97 - 113	17
HFR4	Chothia	-WGQGTQVTVSS	114 - 124	11
	AbM	-WGQGTQVTVSS	114 - 124	11
	Kabat	-WGQGTQVTVSS	114 - 124	11
	Contact	YWGQGTQVTVSS	113 - 124	12
	IMGT	-WGQGTQVTVSS	114 - 124	11

Accession & Annotations

Accession	4aq1_B
Source	PDB 4aq1 Submitted 12-APR-2012 Updated 03-OCT-2012
Name	STRUCTURE OF THE SBSB S-LAYER PROTEIN OF GEOBACILLUS STEAROTHERMOPHILUS PV72P2 IN COMPLEX WITH NANOBODY KB6
Organism	Lama glama
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	PDB: 4aq1_D
References	BARANOVA E., FRONZES R., GARCIA-PINO A., VAN GERVEN N., PAPAPOSTOLOU D., PEHAU-ARNAUDET G., PARDON E., STEYAERT J., HOWORKA S., REMAUT H. 'SBSB STRUCTURE AND LATTICE RECONSTRUCTION UNVEIL CA21 TRIGGERED S-LAYER ASSEMBLY' NATURE V. 487 119 2012 ISSN 0028-0836

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGLVQAGGSLRLSCAASGRTSSAYAMGWFRQAPGKEREFVAGISSKGGSTYY
GASMKGRFTISRDNAKNTVYLQMNGLAPEDTAVYYCAASDKYNFDTSHAGYGYWGQGTQV
TVSSHHHHHH