abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
Leader	GPS	1 - 3	3
HFR1	QVQLQESGGGLVQAGGSLRLSCAASRSIFS	4 - 33	30
CDR-H1	IDTAN	34 - 38	5
HFR2	WYRQPPGMQRELVA	39 - 52	14
CDR-H2	TITRDGNANYADSVKG	53 - 68	16
HFR3	RFTISRDRARNTVYLQMNSLKPEDTGVYYCNA	69 - 100	32
CDR-H3	AIRTTVRTSAQEY	101 - 113	13
HFR4	WGQGTQVTVSS	114 - 124	11
			124

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQAGGSLRLSCAAS-----	4 - 28	25
	AbM	QVQLQESGGGLVQAGGSLRLSCAAS-----	4 - 28	25
	Kabat	QVQLQESGGGLVQAGGSLRLSCAASRSIFS	4 - 33	30
	Contact	QVQLQESGGGLVQAGGSLRLSCAASRSIF-	4 - 32	29
	IMGT	QVQLQESGGGLVQAGGSLRLSCAAS-----	4 - 28	25
CDR-H1	Chothia	RSIFSID---	29 - 35	7
	AbM	RSIFSIDTAN	29 - 38	10
	Kabat	-----IDTAN	34 - 38	5
	Contact	----SIDTAN	33 - 38	6
	IMGT	RSIFSIDT--	29 - 36	8
HFR2	Chothia	TANWYRQPPGMQRELVATI	36 - 54	19
	AbM	---WYRQPPGMQRELVA--	39 - 52	14
	Kabat	---WYRQPPGMQRELVA--	39 - 52	14
	Contact	---WYRQPPGMQRE-----	39 - 49	11
	IMGT	-ANWYRQPPGMQRELVAT-	37 - 53	17
CDR-H2	Chothia	-----TRDGN---------	55 - 59	5
	AbM	---TITRDGNAN-------	53 - 61	9
	Kabat	---TITRDGNANYADSVKG	53 - 68	16
	Contact	LVATITRDGNAN-------	50 - 61	12
	IMGT	----ITRDGNA--------	54 - 60	7
HFR3	Chothia	ANYADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYCNA	60 - 100	41
	AbM	--YADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYCNA	62 - 100	39
	Kabat	---------RFTISRDRARNTVYLQMNSLKPEDTGVYYCNA	69 - 100	32
	Contact	--YADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYC--	62 - 98	37
	IMGT	-NYADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYC--	61 - 98	38
CDR-H3	Chothia	--AIRTTVRTSAQEY	101 - 113	13
	AbM	--AIRTTVRTSAQEY	101 - 113	13
	Kabat	--AIRTTVRTSAQEY	101 - 113	13
	Contact	NAAIRTTVRTSAQE-	99 - 112	14
	IMGT	NAAIRTTVRTSAQEY	99 - 113	15
HFR4	Chothia	-WGQGTQVTVSS	114 - 124	11
	AbM	-WGQGTQVTVSS	114 - 124	11
	Kabat	-WGQGTQVTVSS	114 - 124	11
	Contact	YWGQGTQVTVSS	113 - 124	12
	IMGT	-WGQGTQVTVSS	114 - 124	11

Accession & Annotations

Accession	4wgv_D
Source	PDB 4wgv Submitted 19-SEP-2014 Updated 13-SEP-2017
Name	CRYSTAL STRUCTURE OF STAPHYLOCOCCUS CAPITIS DIVALENT METAL ION TRANSPORTER (DMT) IN COMPLEX WITH NANOBODY
Organism	Lama glama
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	PDB: 4wgv_B 4wgw_B 4wgw_D 5m95_B 5m95_D
References	EHRNSTORFER A., GEERTSMA R., PARDON E., STEYAERT J., DUTZLER R. 'CRYSTAL STRUCTURE OF A SLC11 (NRAMP) TRANSPORTER REVEALS THE BASIS FOR TRANSITION-METAL ION TRANSPORT.' NAT.STRUCT.MOL.BIOL. V. 21 990 2014 ESSN 1545-9985

Tools

Sequences

Amino Acid Sequence:

GPSQVQLQESGGGLVQAGGSLRLSCAASRSIFSIDTANWYRQPPGMQRELVATITRDGNA
NYADSVKGRFTISRDRARNTVYLQMNSLKPEDTGVYYCNAAIRTTVRTSAQEYWGQGTQV
TVSS