abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
Leader	AGTAS	1 - 5	5
HFR1	QVQLQESGGGLVQPGGSLRLSCAASGFTFS	6 - 35	30
CDR-H1	NYAMS	36 - 40	5
HFR2	WVRQAPGKGLEVVS	41 - 54	14
CDR-H2	DIGSGGDRITYADSVKG	55 - 71	17
HFR3	RFTISRDNAKNTLYLQMNSLKPEDTAVYYCAN	72 - 103	32
CDR-H3	QYGRGPGTQVTVSSGS	104 - 119	16
HFR4		-	-
			119

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQPGGSLRLSCAAS-----	6 - 30	25
	AbM	QVQLQESGGGLVQPGGSLRLSCAAS-----	6 - 30	25
	Kabat	QVQLQESGGGLVQPGGSLRLSCAASGFTFS	6 - 35	30
	Contact	QVQLQESGGGLVQPGGSLRLSCAASGFTF-	6 - 34	29
	IMGT	QVQLQESGGGLVQPGGSLRLSCAAS-----	6 - 30	25
CDR-H1	Chothia	GFTFSNY---	31 - 37	7
	AbM	GFTFSNYAMS	31 - 40	10
	Kabat	-----NYAMS	36 - 40	5
	Contact	----SNYAMS	35 - 40	6
	IMGT	GFTFSNYA--	31 - 38	8
HFR2	Chothia	AMSWVRQAPGKGLEVVSDI	38 - 56	19
	AbM	---WVRQAPGKGLEVVS--	41 - 54	14
	Kabat	---WVRQAPGKGLEVVS--	41 - 54	14
	Contact	---WVRQAPGKGLE-----	41 - 51	11
	IMGT	-MSWVRQAPGKGLEVVSD-	39 - 55	17
CDR-H2	Chothia	-----GSGGDR---------	57 - 62	6
	AbM	---DIGSGGDRIT-------	55 - 64	10
	Kabat	---DIGSGGDRITYADSVKG	55 - 71	17
	Contact	VVSDIGSGGDRIT-------	52 - 64	13
	IMGT	----IGSGGDRI--------	56 - 63	8
HFR3	Chothia	ITYADSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCAN	63 - 103	41
	AbM	--YADSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCAN	65 - 103	39
	Kabat	---------RFTISRDNAKNTLYLQMNSLKPEDTAVYYCAN	72 - 103	32
	Contact	--YADSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYC--	65 - 101	37
	IMGT	-TYADSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYC--	64 - 101	38
CDR-H3	Chothia	--QYGRGPGTQVTVSSGS	104 - 119	16
	AbM	--QYGRGPGTQVTVSSGS	104 - 119	16
	Kabat	--QYGRGPGTQVTVSSGS	104 - 119	16
	Contact	ANQYGRGPGTQVTVSSGS	102 - 119	18
	IMGT	ANQYGRGPGTQVTVSSGS	102 - 119	18
HFR4	Chothia		-	-
	AbM		-	-
	Kabat		-	-
	Contact		-	-
	IMGT		-	-

Accession & Annotations

Accession	5c3l_D
Source	PDB 5c3l Submitted 17-JUN-2015 Updated 14-OCT-2015
Name	STRUCTURE OF THE METAZOAN NUP62.NUP58.NUP54 NUCLEOPORIN COMPLEX.
Organism	Camelus dromedarius
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	CHUG H., TRAKHANOV S., HULSMANN B., PLEINER T., GORLICH D. 'CRYSTAL STRUCTURE OF THE METAZOAN NUP62NUP58NUP54 NUCLEOPORIN COMPLEX.' SCIENCE V. 350 106 2015 ESSN 1095-9203

Tools

Sequences

Amino Acid Sequence:

AGTASQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYAMSWVRQAPGKGLEVVSDIGSGG
DRITYADSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCANQYGRGPGTQVTVSSGS