abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGLVQPGGSLRLSCAPSGPFSP	1 - 30	30
CDR-H1	NSMG	31 - 34	4
HFR2	WYRQAPGKQRELVA	35 - 48	14
CDR-H2	VMTIDGRTNYQDSVKG	49 - 64	16
HFR3	RFTISRDYVKNTAYLQMNNLKPDDTAVYICNA	65 - 96	32
CDR-H3	ETRGFMH	97 - 103	7
HFR4	WGQGTQVTVSS	104 - 114	11
Tail	HHHHHHEPEA	114 - 124	10
			124

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQPGGSLRLSCAPS-----	1 - 25	25
	AbM	QVQLQESGGGLVQPGGSLRLSCAPS-----	1 - 25	25
	Kabat	QVQLQESGGGLVQPGGSLRLSCAPSGPFSP	1 - 30	30
	Contact	QVQLQESGGGLVQPGGSLRLSCAPSGPFS-	1 - 29	29
	IMGT	QVQLQESGGGLVQPGGSLRLSCAPS-----	1 - 25	25
CDR-H1	Chothia	GPFSPN---	26 - 31	6
	AbM	GPFSPNSMG	26 - 34	9
	Kabat	-----NSMG	31 - 34	4
	Contact	----PNSMG	30 - 34	5
	IMGT	GPFSPNS--	26 - 32	7
HFR2	Chothia	SMGWYRQAPGKQRELVAVM	32 - 50	19
	AbM	---WYRQAPGKQRELVA--	35 - 48	14
	Kabat	---WYRQAPGKQRELVA--	35 - 48	14
	Contact	---WYRQAPGKQRE-----	35 - 45	11
	IMGT	-MGWYRQAPGKQRELVAV-	33 - 49	17
CDR-H2	Chothia	-----TIDGR---------	51 - 55	5
	AbM	---VMTIDGRTN-------	49 - 57	9
	Kabat	---VMTIDGRTNYQDSVKG	49 - 64	16
	Contact	LVAVMTIDGRTN-------	46 - 57	12
	IMGT	----MTIDGRT--------	50 - 56	7
HFR3	Chothia	TNYQDSVKGRFTISRDYVKNTAYLQMNNLKPDDTAVYICNA	56 - 96	41
	AbM	--YQDSVKGRFTISRDYVKNTAYLQMNNLKPDDTAVYICNA	58 - 96	39
	Kabat	---------RFTISRDYVKNTAYLQMNNLKPDDTAVYICNA	65 - 96	32
	Contact	--YQDSVKGRFTISRDYVKNTAYLQMNNLKPDDTAVYIC--	58 - 94	37
	IMGT	-NYQDSVKGRFTISRDYVKNTAYLQMNNLKPDDTAVYIC--	57 - 94	38
CDR-H3	Chothia	--ETRGFMH	97 - 103	7
	AbM	--ETRGFMH	97 - 103	7
	Kabat	--ETRGFMH	97 - 103	7
	Contact	NAETRGFM-	95 - 102	8
	IMGT	NAETRGFMH	95 - 103	9
HFR4	Chothia	-WGQGTQVTVSS	104 - 114	11
	AbM	-WGQGTQVTVSS	104 - 114	11
	Kabat	-WGQGTQVTVSS	104 - 114	11
	Contact	HWGQGTQVTVSS	103 - 114	12
	IMGT	-WGQGTQVTVSS	104 - 114	11

Accession & Annotations

Accession	5dfz_E
Source	PDB 5dfz Submitted 27-AUG-2015 Updated 30-AUG-2017
Name	STRUCTURE OF VPS34 COMPLEX II FROM S. CEREVISIAE.
Organism	Lama glama
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	None
References	ROSTISLAVLEVA K., SOLER N., OHASHI Y., ZHANG L., PARDON E., BURKE E., MASSON R., JOHNSON C., STEYAERT J., KTISTAKIS T., WILLIAMS L. 'STRUCTURE AND FLEXIBILITY OF THE ENDOSOMAL VPS34 COMPLEX REVEALS THE BASIS OF ITS FUNCTION ON MEMBRANES.' SCIENCE V. 350 C7365 2015 ESSN 1095-9203

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGLVQPGGSLRLSCAPSGPFSPNSMGWYRQAPGKQRELVAVMTIDGRTNYQD
SVKGRFTISRDYVKNTAYLQMNNLKPDDTAVYICNAETRGFMHWGQGTQVTVSSHHHHHH
EPEA