abYsis

Numbering & Regions

Comparison Organism:

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Region Sequence Details

Regions Definition

Region	Sequence Fragment	Residues	Length
HFR1	QVQLQESGGGLVQPGGSLRLSCAASGSIFS	1 - 30	30
CDR-H1	GNVMG	31 - 35	5
HFR2	WYRQAPGKLREWVA	36 - 49	14
CDR-H2	AITPQGVPNYADSVKG	50 - 65	16
HFR3	RFTISRDNAKNMLYLQMSSLKPEDTALYYCNR	66 - 97	32
CDR-H3	LPNYRS	98 - 103	6
HFR4	WGQGTQVTVSS	104 - 114	11
Tail	HHHHHH	114 - 120	6
			120

Region	Definition	Sequence Fragment	Residues	Length
HFR1	Chothia	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	AbM	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
	Kabat	QVQLQESGGGLVQPGGSLRLSCAASGSIFS	1 - 30	30
	Contact	QVQLQESGGGLVQPGGSLRLSCAASGSIF-	1 - 29	29
	IMGT	QVQLQESGGGLVQPGGSLRLSCAAS-----	1 - 25	25
CDR-H1	Chothia	GSIFSGN---	26 - 32	7
	AbM	GSIFSGNVMG	26 - 35	10
	Kabat	-----GNVMG	31 - 35	5
	Contact	----SGNVMG	30 - 35	6
	IMGT	GSIFSGNV--	26 - 33	8
HFR2	Chothia	VMGWYRQAPGKLREWVAAI	33 - 51	19
	AbM	---WYRQAPGKLREWVA--	36 - 49	14
	Kabat	---WYRQAPGKLREWVA--	36 - 49	14
	Contact	---WYRQAPGKLRE-----	36 - 46	11
	IMGT	-MGWYRQAPGKLREWVAA-	34 - 50	17
CDR-H2	Chothia	-----TPQGV---------	52 - 56	5
	AbM	---AITPQGVPN-------	50 - 58	9
	Kabat	---AITPQGVPNYADSVKG	50 - 65	16
	Contact	WVAAITPQGVPN-------	47 - 58	12
	IMGT	----ITPQGVP--------	51 - 57	7
HFR3	Chothia	PNYADSVKGRFTISRDNAKNMLYLQMSSLKPEDTALYYCNR	57 - 97	41
	AbM	--YADSVKGRFTISRDNAKNMLYLQMSSLKPEDTALYYCNR	59 - 97	39
	Kabat	---------RFTISRDNAKNMLYLQMSSLKPEDTALYYCNR	66 - 97	32
	Contact	--YADSVKGRFTISRDNAKNMLYLQMSSLKPEDTALYYC--	59 - 95	37
	IMGT	-NYADSVKGRFTISRDNAKNMLYLQMSSLKPEDTALYYC--	58 - 95	38
CDR-H3	Chothia	--LPNYRS	98 - 103	6
	AbM	--LPNYRS	98 - 103	6
	Kabat	--LPNYRS	98 - 103	6
	Contact	NRLPNYR-	96 - 102	7
	IMGT	NRLPNYRS	96 - 103	8
HFR4	Chothia	-WGQGTQVTVSS	104 - 114	11
	AbM	-WGQGTQVTVSS	104 - 114	11
	Kabat	-WGQGTQVTVSS	104 - 114	11
	Contact	SWGQGTQVTVSS	103 - 114	12
	IMGT	-WGQGTQVTVSS	104 - 114	11

Accession & Annotations

Accession	5f7n_C
Source	PDB 5f7n Submitted 08-DEC-2015 Updated 01-JUN-2016
Name	BLOOD GROUP ANTIGEN BINDING ADHESIN BABA OF HELICOBACTER PYLORI STRAIN 17875 IN COMPLEX WITH BLOOD GROUP A LEWIS B PENTASACCHARIDE
Organism	Vicugna pacos
Chain Type	Heavy
Pairing	None
Identical Protein Sequences	PDB: 5f7k_C 5f7k_D 5f7m_C 5f7m_D 5f7n_D 5f7w_C 5f7w_D 5f7y_C 5f7y_D 5f8q_C 5f8q_D 5f8r_C 5f8r_D 5f93_C 5f93_D 5f93_F 5f93_H 5f97_E 5f97_F 5f97_G 5f97_H 5f9a_C 5f9d_C
References	MOONENS K., GIDEONSSON P., SUBEDI S., BUGAYTSOVA J., ROMAO E., MENDEZ M., NORDEN J., FALLAH M., RAKHIMOVA L., SHEVTSOVA A., LAHMANN M., CASTALDO G., BRANNSTROM K., COPPENS F., LO W., NY T., SOLNICK V., VANDENBUSSCHE G., OSCARSON S., HAMMARSTROM L., ARNQVIST A., BERG E., MUYLDERMANS S., BOREN T., REMAUT H. 'STRUCTURAL INSIGHTS INTO POLYMORPHIC ABO GLYCAN BINDING BY HELICOBACTER PYLORI.' CELL HOST MICROBE V. 19 55 2016 ESSN 1934-6069

Tools

Sequences

Amino Acid Sequence:

QVQLQESGGGLVQPGGSLRLSCAASGSIFSGNVMGWYRQAPGKLREWVAAITPQGVPNYA
DSVKGRFTISRDNAKNMLYLQMSSLKPEDTALYYCNRLPNYRSWGQGTQVTVSSHHHHHH